Basic Information

Insect: Papilio glaucus
Gene Symbol: -
Assembly: None
Location: scaffold:72873-85458[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00065 0.04 14.2 6.7 1 23 189 211 189 211 0.98

2 13 9.8e-07 6e-05 23.1 0.5 2 23 224 245 224 245 0.97

3 13 3.2e-05 0.0019 18.3 1.4 2 23 254 275 254 275 0.98

4 13 0.0021 0.13 12.6 2.0 1 23 281 303 281 303 0.96

5 13 9.7e-05 0.0059 16.8 0.8 1 23 309 331 309 331 0.95

6 13 1.3e-05 0.00077 19.6 8.4 2 23 338 359 337 359 0.97

7 13 1.5e-05 0.00092 19.3 0.7 1 23 365 387 365 387 0.97

8 13 2e-06 0.00012 22.1 1.3 1 23 393 415 393 415 0.99

9 13 7.8e-05 0.0048 17.1 0.5 1 23 421 443 421 443 0.98

10 13 0.0022 0.14 12.5 2.0 1 23 449 471 449 471 0.96

11 13 0.00011 0.0065 16.7 0.3 3 23 479 499 477 499 0.98

12 13 1.2e-06 7.1e-05 22.9 0.6 1 23 505 527 505 527 0.99

13 13 0.0017 0.11 12.9 3.2 1 23 593 615 593 615 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00065	0.04	14.2	6.7	1	23	189	211	189	211	0.98
2	13	9.8e-07	6e-05	23.1	0.5	2	23	224	245	224	245	0.97
3	13	3.2e-05	0.0019	18.3	1.4	2	23	254	275	254	275	0.98
4	13	0.0021	0.13	12.6	2.0	1	23	281	303	281	303	0.96
5	13	9.7e-05	0.0059	16.8	0.8	1	23	309	331	309	331	0.95
6	13	1.3e-05	0.00077	19.6	8.4	2	23	338	359	337	359	0.97
7	13	1.5e-05	0.00092	19.3	0.7	1	23	365	387	365	387	0.97
8	13	2e-06	0.00012	22.1	1.3	1	23	393	415	393	415	0.99
9	13	7.8e-05	0.0048	17.1	0.5	1	23	421	443	421	443	0.98
10	13	0.0022	0.14	12.5	2.0	1	23	449	471	449	471	0.96
11	13	0.00011	0.0065	16.7	0.3	3	23	479	499	477	499	0.98
12	13	1.2e-06	7.1e-05	22.9	0.6	1	23	505	527	505	527	0.99
13	13	0.0017	0.11	12.9	3.2	1	23	593	615	593	615	0.98

Sequence Information

Coding Sequence: ATGGCTGCTGTCAATAAATCTAAGAATTTGAACCTAGAAAAAGTGTGTAGAGCTTGTTTGCAAATTAAAAAAGACATGAGACCTTTATTCGAACAACTTACCGCGACAATGTTGATGGGAATATCCAAAGTGCAGGTAGCAGTGGGTGATGGATTACCAGCGCAGCTGTGCCTTCAGTGTGTGCACCAGATTTCCAGATGTCATGCGTTCAAGGAGATGGTGGAGAGAAATGACATTACAATACGTGAGCAGGCGAAGTGGGAAGCAGAGGCTCTCAAGAATAATGAAAACAAAATCACCATATCATGTGCGGAGCAGTCTCCCTACATCCAGTACATTGAAGTGCCAATAACGAACAACGGCAATCAGATGCTGGAAGGATTCTTCACCAATACACCGGACCAGACTCAGACAACAAAAGAGATACAGAAGGAGAACTTTGAAATTGAGAAGACTGATCAAACTCCACCAGCTAAAGACGATGATGATGGCATAAACATAGATGAGGACAACTATATGCAGATGGTTGTGTTCCAAGTGACCTCCTCAGTATCTCCTGGCCGTCATGTCTGCAATCTCTGTCATAAGGAGTTCAAGCATGGAAGATGGCTGAAGATGCATATGCGGTCGCACGCGAATTGGATAAAGGCGAACTGCAAGAAACCACCTAGTTGCCCAGTGTGTAAGAAGACATTTAAGGGTCCGGGTATGCTACGCATGCATATGCGCACGCACGAAGAACGTCCACCAAAGAAACCAACATGTTCGGTCTGCCAAAGAGTGTTCCCGACCAAGACATTGCTCTATCGTCATAGACAAACGCATTTCGAGCAGAAATTGCATAATTGTACCGTTTGTGAGAAACGCTTCTTTACCGGCTACGCGTTAAGGTCGCATTTGGCACGGCACCGTGGAGAAAGGCCGTATCTCTGCTCGATTTGTTTGAAGAGCTTCTATAACCCCACTGATTTAAAGGTTCATTTTCGACTGCATACGGGCGAGAAACCACTAAAGTGCTCGGAGTGCAACAAGACCTTCCGGAGACACTCCACCCTCTGCCAGCACATGAAGAAGCACCGCGGCATCAGGAATCACATCTGTTCAGTCTGTAATAAGGCTTTCTATGAAGTATCCAAACTTACCGCGCACATGAGAGTACATACAGGCGAGAGGCCGTACGAGTGTCAGTTCTGCGACCGCAAATTCGCGCAGCAGTCGGCGTTGATCTACCACCGGCGCACACACACCGGAGAGAAGCCGTACAACTGCAAGGTCTGCCCAGCGCGCTTCACCACCTCCTCCGCCCGCAACAACCACATGGTCACACACACCGGCAACAAGAAGTTCATCTGTCCCGTATGCTTCAAAGGCTGCACCTCTCGGACGGAGCTGCGCGTGCACTCCAGCAAGCATACTGGTGAGAAGCTGTTCGGCTGTGAGCTGTGCTCGCAGCGCTTCAGCTCGGCGTCCTACCTCGCGGTGCACAGGAGAATTCACACTGGCGAGAGGAAGTACCAGTGCAATGTCTGCGGAAAGGCGTACATAGAGTCGAGTGCTTACAAGAAACATTTAAAAACGCACTTAGTTAAAGGAGATTCGGATTCCGTCAACACGGAAATCAATTCTGCGACACAAAACCCCGACAAGGAGGAAGAGGAAAAGGAAACGCAGCACTTAGTGACCATAAGTGAGGAAACAACTGTTGACGCTCAGATCCAATCTCAACCACAAGAACAGCCGGTACAAAGTCCAGAAAGTGCAATCAGCCAGAAGAGATTTAAATGCGGACTCTGTGCTAAAAACTATATGTATCTGCACAGTTTGAAGAAACATATGATGTCACATTTGACGGAACATCAACAACAACAGCAACAGCAGCAACAACAACAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAACAGCAGCAACAACAACAACAGCAACAACAACATCAGCAACAACACCATCATCACCAACACCCACAGCGTCAGCCACAGCAAACTCAACAGCTGCAACATTCGCCGCAGCTACAACAGACACAGCAGCAGCTCCAGCCGTCGCAGCTGCAGCAGCAGGTGGTGCAAGTGAACGGCGTGCCGCAGCTGGCTATGCCGCTGCACGCTCAGCACGTCGCCCAGGGCATCACCGTCACCGGTGTACAGGGTGGGCAGCACACCTACCCGGTGATATCATCAGTGCAGTCCCTACAGCTGCAGCAAACTCACCAGCAAGTCAATACGCCTCAACAGCTGCAGGTGCAGACCATACAGATTCATCCGCAGCACCAGCCCATACAGATACACGCGGTGGGCGTGCAGCAAGTGCAGCAACAGCAGCTGCACGTGGCGACGTCCGCCTGCCAGACCATGCTGCCCAATATATTGCAGCTACAGCCGGCGACTGTAGCGGTGTCTGGTCTCAGCCAGCAGGAGCTCAGCGGCGTCGCGCACCGCATCATACTGCAGCAGCCGCCCACCCATCCAGCCCTATACTCCATACACCACTGA
Protein Sequence: MAAVNKSKNLNLEKVCRACLQIKKDMRPLFEQLTATMLMGISKVQVAVGDGLPAQLCLQCVHQISRCHAFKEMVERNDITIREQAKWEAEALKNNENKITISCAEQSPYIQYIEVPITNNGNQMLEGFFTNTPDQTQTTKEIQKENFEIEKTDQTPPAKDDDDGINIDEDNYMQMVVFQVTSSVSPGRHVCNLCHKEFKHGRWLKMHMRSHANWIKANCKKPPSCPVCKKTFKGPGMLRMHMRTHEERPPKKPTCSVCQRVFPTKTLLYRHRQTHFEQKLHNCTVCEKRFFTGYALRSHLARHRGERPYLCSICLKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHICSVCNKAFYEVSKLTAHMRVHTGERPYECQFCDRKFAQQSALIYHRRTHTGEKPYNCKVCPARFTTSSARNNHMVTHTGNKKFICPVCFKGCTSRTELRVHSSKHTGEKLFGCELCSQRFSSASYLAVHRRIHTGERKYQCNVCGKAYIESSAYKKHLKTHLVKGDSDSVNTEINSATQNPDKEEEEKETQHLVTISEETTVDAQIQSQPQEQPVQSPESAISQKRFKCGLCAKNYMYLHSLKKHMMSHLTEHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQHHHHQHPQRQPQQTQQLQHSPQLQQTQQQLQPSQLQQQVVQVNGVPQLAMPLHAQHVAQGITVTGVQGGQHTYPVISSVQSLQLQQTHQQVNTPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSACQTMLPNILQLQPATVAVSGLSQQELSGVAHRIILQQPPTHPALYSIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115855;
90% Identity: iTF_01141840;
80% Identity: -