Pelw015306.1
Basic Information
- Insect
- Papilio elwesi
- Gene Symbol
- -
- Assembly
- GCA_029641285.1
- Location
- CM056356.1:2934013-2946467[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00073 0.064 14.2 6.7 1 23 189 211 189 211 0.98 2 13 1.1e-06 9.7e-05 23.1 0.5 2 23 224 245 224 245 0.97 3 13 0.0001 0.0091 16.9 1.5 2 23 254 275 254 275 0.98 4 13 0.0023 0.21 12.6 2.0 1 23 281 303 281 303 0.96 5 13 0.00011 0.0096 16.8 0.8 1 23 309 331 309 331 0.95 6 13 1.3e-05 0.0012 19.7 8.6 2 23 338 359 337 359 0.97 7 13 1.9e-05 0.0017 19.2 0.8 1 23 365 387 365 387 0.97 8 13 2.2e-06 0.00019 22.1 1.3 1 23 393 415 393 415 0.99 9 13 3.6e-05 0.0032 18.3 0.5 1 23 421 443 421 443 0.98 10 13 0.0025 0.22 12.5 2.0 1 23 449 471 449 471 0.96 11 13 0.00012 0.011 16.7 0.3 3 23 479 499 477 499 0.98 12 13 1.3e-06 0.00011 22.8 0.6 1 23 505 527 505 527 0.99 13 13 0.002 0.17 12.8 3.2 1 23 593 615 593 615 0.98
Sequence Information
- Coding Sequence
- ATGGCTGCTGTAATTAAATCTAAGAATTTGAACCTAGAAAAAGTGTGTAGAGCTTGTTTGCAAATCAAAAAAGATATGAGACCTTTATTCGAACAACTTACCGCGACAATGTTGATGGGAATATCCAAAGTGCAGGTAGCAGTAGGTGATGGATTACCAGCGCAGCTGTGCCTTCAGTGTGTGCACCAGATTTCCAGATGTCATGCGTTCAAGGAGATGGTGGAGAGAAATGACGTCACAATACGTGAGCAGGCGAAGTGGGAAGCAGAGGCTCTCAAGAATAATgaaaacAAAATCACCATATCATGTGCAGAGCAGTCCCCCTACATCCAGTACATAGAAGTACCAATTACGAACAACAGCAATCAGATGCTGGAGGGATTCTTCACCAATACACCGGACCAGAGTCAGACAACAAAAGAGATGCAGAAGGAGAACTTTGAAATTGAGAAGACTGACAACAATCCACCAGCCAAAGACAATGAGGATGGCATAAACATAGATGAGGACAACTATATGCAGATGGTTGTGTTCCAAGTGACCTCCTCAGTATCTCCGGGCCGGCACGTCTGCAATCTCTGCCATAAAGAGTTCAAGCATGGCAGATGGCTGAAGATGCATATGCGGTCGCACTCGAATTGGATAAAGGCGAACTGCAAAAGGCCGCCTAGTTGTCCAGTGTGTAAGAAGACATTTAAGggTCCGGGTATGCTACGCATGCATATGCGCACGCACGAAGAACGTCCACCAAAGAAACCAACATGTTCGGTCTGCCAAAGAATTTTCCCGACCAAGACATTGCTCTATCGCCATAGACAGACGCATTTCGAGCAGAAATTGCATAATTGTACCGTTTGTGAGAAACGCTTCTTTACCGGGTACGCGTTAAGGTCGCATTTGGCTCGGCACAGGGGGGAAAGGCCGTATCTCTGCTCGATTTGTTTGAAGAGCTTCTATAACCCCACTGATTTAAAGgtTCATTTTAGACTGCACACAGGCGAGAAACCACTAAAGTGCACAGAGTGCAACAAGACCTTCCGGAGACACTCCACCCTCTGCCAGCACATGAAGAAGCACCGTGGCATTCGGAACCACATCTGCTCAATCTGTAATAAGGGTTTCTATGAAGTATCCAAACTTACTGCGCACATGAGAGTACATACAGGCGAGAGGCCGTACGAGTGCCAGTTCTGTGACCGCAAGTTCGCGCAGCAGTCGGCGTTGATCTACCACCGGCGCACACACACCGGAGAAAAGCCGTACACCTGCAAGGTCTGCCCCGCGCGCTTCACCACCTCCTCCGCCCGCAATAACCACATGGTCACACACACCGGCAACAAGAAGTTCATCTGTCCGGTATGCTTCAAAGGCTGCACCTCTCGGACGGAGCTGCGCGTGCACTCCAGCAAGCATACTGGTGAGAAGCTGTTCGGCTGTGAGCTGTGCTCGCAGCGCTTCAGCTCGGCGTCCTATCTCGCGGTGCACAGGAGAATTCACACCGGTGAGAGGAAGTACCAGTGCAATGTGTGCGGAAAGGCGTACATAGAGTCGAGTGCTtacaagaaacatttaaaaacgcACTTAGTTAAGGGAGATTCGGATTCCGGTAACACGGAAATCAATTCTGCGACACAAAACCCCGACAAggaggaagaggaaaaggaaacgCAGCACTTAGGGACCATAAGTGAGGAGATAGCTGTTGACGCTCAGATCCAATCTCAACCACAAGAGCAGCCGGTACAGAGTCCGGAAAGTGCAGTCAGCCAAAAGAGATTCAAATGCGGACTCTGTGCTAAAAACTATATGTATCTACACAGTTTGAAGAAACATATGATGTCACATTTGGCGGAACATCATCAACAGCAAcggcagcagcagcagcagcagcaccaacaacaacaacaacaacaacaacaacaacaacaacagcagcagcagcagcaacaacaacaacagcagcagcaacaacaacagcagcaacaacaacaacatcagcaACACCATCATCACCAACACCCACAGCGTCAACCACAGCAGACTCAACAGCTACAACATTCGCCGCAGCTCCAGCAGTCGCAGCTGCAGCAGCAGGTGGTGCAGGTGAATGGCGTGCCGCAACTGGCGATGCCGCTACACGCTCAGCACGTCGCCCAGGGCATCACTGTCACCGGTGTACAGGCTGGACAGCACACGTATCCGGTGATATCTTCAGTGCAGTCCCTACAGCTGCAACAAACTCACCAGCAAGTCAATACGCCTCAACCGCTGCAGGTGCAGACCATACAGATTCATCCGCAGCACCAGCCCATACAGATACATGCGGTGGGCGTGCAGCAAGTGCAGCAACAACAGCTGCACGTGGCGACGTCCGCCTGCCAGACCATGCTGCCCAATATTTTGCAACTACAGCCGGCGACTGTAGCGGTGTCTGGTCTGAGCCAGCAGGAGCTCAGCGGCGTCGCGCACCGCATCATTCTGCAGCAGCCGCCCACCCATCCAGCTCTATACTCCATACACCACTGA
- Protein Sequence
- MAAVIKSKNLNLEKVCRACLQIKKDMRPLFEQLTATMLMGISKVQVAVGDGLPAQLCLQCVHQISRCHAFKEMVERNDVTIREQAKWEAEALKNNENKITISCAEQSPYIQYIEVPITNNSNQMLEGFFTNTPDQSQTTKEMQKENFEIEKTDNNPPAKDNEDGINIDEDNYMQMVVFQVTSSVSPGRHVCNLCHKEFKHGRWLKMHMRSHSNWIKANCKRPPSCPVCKKTFKGPGMLRMHMRTHEERPPKKPTCSVCQRIFPTKTLLYRHRQTHFEQKLHNCTVCEKRFFTGYALRSHLARHRGERPYLCSICLKSFYNPTDLKVHFRLHTGEKPLKCTECNKTFRRHSTLCQHMKKHRGIRNHICSICNKGFYEVSKLTAHMRVHTGERPYECQFCDRKFAQQSALIYHRRTHTGEKPYTCKVCPARFTTSSARNNHMVTHTGNKKFICPVCFKGCTSRTELRVHSSKHTGEKLFGCELCSQRFSSASYLAVHRRIHTGERKYQCNVCGKAYIESSAYKKHLKTHLVKGDSDSGNTEINSATQNPDKEEEEKETQHLGTISEEIAVDAQIQSQPQEQPVQSPESAVSQKRFKCGLCAKNYMYLHSLKKHMMSHLAEHHQQQRQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQHHHHQHPQRQPQQTQQLQHSPQLQQSQLQQQVVQVNGVPQLAMPLHAQHVAQGITVTGVQAGQHTYPVISSVQSLQLQQTHQQVNTPQPLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSACQTMLPNILQLQPATVAVSGLSQQELSGVAHRIILQQPPTHPALYSIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01115855;
- 90% Identity
- iTF_01143280;
- 80% Identity
- -