Pgla014003.1
Basic Information
- Insect
- Papilio glaucus
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:61433-71972[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0096 0.58 10.5 0.9 3 23 211 232 210 232 0.92 2 23 0.026 1.6 9.1 0.6 1 22 622 643 622 643 0.95 3 23 4 2.5e+02 2.3 0.3 1 22 685 706 685 708 0.82 4 23 0.0039 0.24 11.8 0.6 2 21 718 737 717 738 0.94 5 23 0.4 24 5.4 0.3 2 23 746 768 745 768 0.89 6 23 0.0036 0.22 11.9 0.1 3 23 789 810 787 810 0.96 7 23 0.0011 0.069 13.4 2.5 1 23 816 839 816 839 0.95 8 23 0.075 4.6 7.7 0.0 1 23 865 888 865 888 0.90 9 23 0.011 0.69 10.3 3.4 1 23 893 915 893 915 0.97 10 23 0.0069 0.42 11.0 0.4 1 23 921 944 921 944 0.95 11 23 0.0031 0.19 12.1 0.8 1 23 958 980 958 980 0.97 12 23 0.00011 0.0065 16.7 1.8 1 23 1029 1052 1029 1052 0.97 13 23 0.0029 0.17 12.2 1.7 1 23 1113 1136 1113 1136 0.96 14 23 0.0029 0.18 12.1 4.0 2 23 1160 1182 1159 1182 0.95 15 23 0.052 3.2 8.2 0.1 2 23 1188 1210 1187 1210 0.93 16 23 0.0059 0.36 11.2 0.2 1 21 1253 1273 1253 1274 0.95 17 23 0.00025 0.015 15.5 1.0 1 23 1284 1306 1284 1306 0.93 18 23 6.7e-05 0.0041 17.3 0.3 2 23 1406 1428 1406 1428 0.93 19 23 3.7e-07 2.3e-05 24.4 1.1 3 23 1435 1455 1434 1455 0.98 20 23 0.0043 0.26 11.6 0.5 1 23 1474 1496 1474 1497 0.94 21 23 0.072 4.4 7.8 0.0 1 23 1517 1539 1517 1539 0.97 22 23 0.0033 0.2 12.0 0.4 1 23 1545 1568 1545 1568 0.96 23 23 0.00015 0.0093 16.2 0.4 1 23 1576 1599 1576 1599 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGGCCTCGCTTCAAAAATCAGGGATTGTGTATCCGTAGAGATAAACGAAGATGACGACCTGCCAACGAATGTTTGCAGAAAATGCTGTGACAATGTGAATAACTGGCACATTTTTAAAGATGTATGTGAAAGGACACAAAACAAACTACAGACACTCATTAAAAATGATGGCAGCCAACTAGAAGAGGTGCAAATTAAAAGTGAACCTTTTTCTGATGAGGCTTATGATGATGGAGTGGTTATTGAAGCATCATACCCTGACCTTGAGTGTGCATCTACATCAAGTAAAGCCCAGCCAGAAGGCCCCCCTATCTTGGCATCGCTGGGTCTCACACCAAGAAGTGATAAGGGGATGGAGAGCGAAAATAATGAAGAGGAAGATGAAGAAATGAACGAAGAAGAGATGAATGACTCCAGTCAACAATTTCCAAATGTACCTAACATGCCCGAGGTCTCTATAACTGTGATGCGTCCTACCGGTGAGACTTTGCACGCTCGTCAAGGGATTCAACAACTCGCTTCGAAGGATTGTCTCGTGTGCGGTCGCTCTTATAGATATTCACATAACGCCCGGCGCCATGAACTTAATGCTCACAGTTTTGACAGATATACAAACAAAATAACCACCAAGAAATCACACAATGTACACATGCACCCAAAACTTAGACCCAATCCTTTCAATCCCAAAGCGAGGCTAATGCCTAATCCTATTAGTCATAAAATGCAGTTGATCCCTAAAGGGATTAATTCAAAAATCATACAGCATAAAGCTTTTGCCCCACCAAAACCTATACCAATTAAAACACCAAAGGGCGCCCAAAATAATTTGCCATACCCGCTTCGCATTAAGGCTCTAAAAGACTTACAAATAAAGAAAAAAGAACCGCAAATCCTTAAAACATTGTTGACAACGAAACCCGAAGTTTTGGTATCTGAACCAGAAATTATTAATTCTGGCCCGGGAAGTCCAGAAACTTTGATATCTGAGCCAGAAATAGCTTCGTTTCAAGTAGAGGCTATCCTTTCAGAACCAGATACTTATATTCAACAAGATGATGAAGATGTAGATGGTGAAATGCAAAATAATCAAGGCCAAAATTACGACACTGTTGACATGGATTCTGAAAATGAGATCGAGATCGCTCGTCAACAAGAAAACAATGTTGACGGTGAAGGCGACGGTGATGGCGATGATCATCTGGTTAATAACGAACGGGAGGAAGGCAATGAAATGGATAATTTAGATAATGATGATGAAAATAACATGGAAAGAAATCAAAGCGATAATGAGAATGATCAAATAGACTACAATGTCGATAGTGGAGACCGGTTACAGATTGTCAACGATAACGAAGGTAGGGACGATGAAGAAAATGAACGTGAAACCAAAGAAGGTGAAGAAGCAAATGATGAACGAGATGATGAACAGATGGAGTACAACCACGACGATGATGATGAGGAACTGCCTCCTATAGCCCCCGTGGTTGAAATCAACGAAGATTTGCAAACAAACTCTTATAACAGTGAAGTAAACGATGAAGAGCTCGATGAAACAGCCGACCCTAACGACACAACAGAGGATGCCAAAGAGCTCGATCCTGATAAGCTATATGTAACCAAGACACAGAGAGATTTCATACACAAATATAGGGATATTATCGAACAGATTAACACAAAAAGATGCCTTTGTTGTGATAGGGAACACCCCCGCCGCAAAGCTGTTATACAACATTTGCAGAAAAACGGACACAAAGTCCCTAAACACACGTGTTACAATTGCGTTGTTACGTTCAGCCACATTGGCGCTCTGCTCAGTCACATGCGCTCCAACACTTGCACAGATTTATGGAAGATTATTTACAATGAAAATGGCATCACCGAAGATTTAGTTCTGGAGGATGAACCTAAAGATACCAAAGTTCAATATAAAGATATATTTAATGCAAGGTCATACGCATGTAAATTGTGTCCAGCCAAATTCCAGTTGAAACAGTTTATTATGAAACATGTACTAGACGTACATGAAGATGGCCAGTCTCGTGTGCAGCTAGTCTGTGTTCACTGTAATTCCAGATTCAAAGATAAGGCTTTGTGGAAGAGGCATATCCGCAACGGGGAATGTACCGTTTATATTTCATGCGATTTGTGTTCCGAAAGATTTGGTAACATGCAACATTTCAACGACCACGCATTAGCCGTACATGCGGGTAACTTTGACCAAACTGATAATCAGAACAAATGTGTCGACGGACGACCGACGGACTGTCCCATTTGTGGGAAGAAGAACAGTAGCTATCCGAATTTAGTTAAACATTTAAAGATTATCCACAGCGAGGAAAAACCTCATTACTGCCAGCACTGCGATTCTAAATTTGAACAAGCTGCTGATCTCAATAAACACATCTATATGGAGCATTCCGATAGAACGTTAGGCGTGCAGAGCAACGAGCCCGACATGTCTCTCGTGAAGGAGGAAACGGAGGAGTACCACTACTCTTGCACAGAATGTAACGCCATATTCGAAACTGTCGACGCTTGGACGGATCATCAGGTGGCTGAACACAATCAAGTCGCTCATCACTGCGACCAATGCGAAAAGAAATTCCTAAGACCATCAGAATTGGCGGAGCACAAGAATACGCATTTAAGGGTCAAATTTTATCCCTGCAGCATTTGCTCCAATTCGTACAGCACACCCCAAAAGCTTTCTGAACACGTTCAGCAAAAGCATCCCGGAGCAGCGGGAGCATACGTGCCCATGGACTATGACTTCTTCTGCGACATCTGCATCAGGCCGTTCAAGAGCCGCCAAGCCTACTCGAACCACATGCGCATACACGCTAAAGTACCGACCACGAATAGAAAACCCGGAGAACCGAAAGGATTCGCCCCGCAAATTGTCGGCAAACCGATTAGATCCTTCTCGATGGTACAACCTAGTTTTCTTTCTTTCAAACCTAATTGTAACGTTCCGAATGCGCCTTACTCGTGTGATATCTGCGGAAAAGGTTTCATGCATAAGAAAAACATTTGGAAGCACAAGAAAGTGCTGCACGCGGACCACGTCGGTGACCGAAACGACAGCGAAGACAACACTATGCATGCCTCGACCGAAGAGGACGAATACAATTTAGACGAAAATGGCGCCGTTCTTTCGACACCTCAATTCAATAGTTTTAACTTTTCGAACTTAACAAACAGCTTGCAGCAACAAGCCTCCCAAGATGCCACACCTTATTCCTGTGAGTTATGCTTCAAACGGTTTCCACTTCGAACGAGCTTGTGGAAACACAAACGCGCCAAGCATGGAATCATTAACGCCAGTGCCAGTGGTAGCTCAGATTCGCCAATAATGGCCGGAGAAGGCGGTAGATCGAGTTGCACGATTTGTAAAATTACATTTTCAGACAAAAAGTCGTACTATCGCCACAGAAAGCACGTTCATAAGTCCTCAGCGCAGATGTGCAAAATATGCGGAAAACCTTTAAATTCCACATTAGAATTATATGAGCATCTCAAAGCCGCCCACGCTAGGGAGTTACTCGGATACAACGCGAGTCAAGGTCCCGTTAAACAAGATATTTCCCAAGATTTAGAAGTGGAATATGACGGTGACCAGGATTCAGTAGACCCCAGTGCGGAATATCAAGCCCGTTACCCGTGCGACACTTGTGGTAAACAATTCGTCGGCTTGCTCGCGTTACAGAACCACCAATGCATAAACCAATTAGACTCATCTCCACAGACCTTCGATTGCGAAATATGCCACAAGAGCTATACTTCTATTTCTGCGTTAAAGAGCCACCGCGGTTGGCATTTGCGTTCCCCGGACGGCAAGGCGGCCGCCAACAATTCCGGCCTGTGGATGCCTCAGCATAAAGTTACGACCAAGGTCAGTAAGCACGAAGTGGTCGACCCCTCGCAACTCGCGCGAGTCACTCACACGACGCCGACCCCGACACCGACGCCCACGCCGACGCCGGCCAGCGTCGCCAAGAGGAGACTGCCGCCGGAAGTAGAAGTCACTGTCGTAAATCCCAATAAGAAATTGCGTTCTGACGACTCGGTAGAATTGGAACAGCAGAACAATTCCTCCACCGGAGCCGACGATAGATACTGCACCATATGCGACAAAGAGTTCACCAAACGAGCGGCTTATCAGCGTCACATGGATGAAGTGCACCAGCCCAACTCCGTGTTCTGTCCGGTCTGTGAGAAGAGTTTCACGCGCAAGTCGACGTTGATCGTTCACATGAAGAAACATTACGGCGGCGGCGAAAGTAGTTCAACCGCTGCCGATCAGAACGAAGACGATAGCTTCGCGTGTGACTTTTGCGGAGCGCAGTTCATAAACGACAATGATTTAAGAGCCCACCGGGCGAAGCATCACGGTGATGATTCAGGAGAGTCGGAAGACGAGGGTACTAGCGTTCCTCCTCCGGGCGAGTTTACTTGCGGGCAGTGCGGGGACGGCGTGGCCACACCCCGCGACCTAATAGCCCACCGCACCATGCACGCGACGCCCACCAAATTCTACTGCAACATCTGCAAGGTGTACTTCGCGCGCGCCATCGATCTCTCGTCGCACACGCGCGCGCGACATGCAGACAACGAGAAGGTGTTCTTTCCGTGCGCGATGTGCGACAGATTTTACATGAACAAGAAGAGTTTGCAGCGGCACATCGAGATGGCGCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPGLASKIRDCVSVEINEDDDLPTNVCRKCCDNVNNWHIFKDVCERTQNKLQTLIKNDGSQLEEVQIKSEPFSDEAYDDGVVIEASYPDLECASTSSKAQPEGPPILASLGLTPRSDKGMESENNEEEDEEMNEEEMNDSSQQFPNVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELNAHSFDRYTNKITTKKSHNVHMHPKLRPNPFNPKARLMPNPISHKMQLIPKGINSKIIQHKAFAPPKPIPIKTPKGAQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIINSGPGSPETLISEPEIASFQVEAILSEPDTYIQQDDEDVDGEMQNNQGQNYDTVDMDSENEIEIARQQENNVDGEGDGDGDDHLVNNEREEGNEMDNLDNDDENNMERNQSDNENDQIDYNVDSGDRLQIVNDNEGRDDEENERETKEGEEANDERDDEQMEYNHDDDDEELPPIAPVVEINEDLQTNSYNSEVNDEELDETADPNDTTEDAKELDPDKLYVTKTQRDFIHKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNTCTDLWKIIYNENGITEDLVLEDEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLVCVHCNSRFKDKALWKRHIRNGECTVYISCDLCSERFGNMQHFNDHALAVHAGNFDQTDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHSEEKPHYCQHCDSKFEQAADLNKHIYMEHSDRTLGVQSNEPDMSLVKEETEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSTPQKLSEHVQQKHPGAAGAYVPMDYDFFCDICIRPFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIVGKPIRSFSMVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADHVGDRNDSEDNTMHASTEEDEYNLDENGAVLSTPQFNSFNFSNLTNSLQQQASQDATPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGSSDSPIMAGEGGRSSCTICKITFSDKKSYYRHRKHVHKSSAQMCKICGKPLNSTLELYEHLKAAHARELLGYNASQGPVKQDISQDLEVEYDGDQDSVDPSAEYQARYPCDTCGKQFVGLLALQNHQCINQLDSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTTKVSKHEVVDPSQLARVTHTTPTPTPTPTPTPASVAKRRLPPEVEVTVVNPNKKLRSDDSVELEQQNNSSTGADDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLIVHMKKHYGGGESSSTAADQNEDDSFACDFCGAQFINDNDLRAHRAKHHGDDSGESEDEGTSVPPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFYCNICKVYFARAIDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155687;
- 90% Identity
- iTF_01141836;
- 80% Identity
- -