Pelw003241.2
Basic Information
- Insect
- Papilio elwesi
- Gene Symbol
- -
- Assembly
- GCA_029641285.1
- Location
- CM056339.1:4234246-4242228[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.011 0.93 10.5 0.9 3 23 210 231 209 231 0.92 2 23 0.029 2.6 9.1 0.6 1 22 616 637 616 637 0.95 3 23 4.5 3.9e+02 2.3 0.3 1 22 679 700 679 702 0.82 4 23 0.0043 0.38 11.8 0.6 2 21 712 731 711 732 0.94 5 23 0.44 39 5.4 0.3 2 23 740 762 739 762 0.89 6 23 0.004 0.35 11.9 0.1 3 23 783 804 781 804 0.96 7 23 0.0013 0.11 13.4 2.5 1 23 810 833 810 833 0.95 8 23 0.083 7.3 7.7 0.0 1 23 859 882 859 882 0.90 9 23 0.012 1.1 10.3 3.4 1 23 887 909 887 909 0.97 10 23 0.0076 0.67 11.0 0.4 1 23 915 938 915 938 0.95 11 23 0.0034 0.3 12.1 0.8 1 23 952 974 952 974 0.97 12 23 0.00012 0.01 16.7 1.8 1 23 1023 1046 1023 1046 0.97 13 23 0.0032 0.28 12.2 1.7 1 23 1107 1130 1107 1130 0.96 14 23 0.0033 0.29 12.1 4.0 2 23 1154 1176 1153 1176 0.95 15 23 0.058 5.1 8.2 0.1 2 23 1182 1204 1181 1204 0.93 16 23 0.0066 0.58 11.2 0.2 1 21 1247 1267 1247 1268 0.95 17 23 0.00028 0.024 15.5 1.0 1 23 1278 1300 1278 1300 0.93 18 23 7.4e-05 0.0065 17.3 0.3 2 23 1398 1420 1398 1420 0.93 19 23 4.1e-07 3.6e-05 24.4 1.1 3 23 1427 1447 1426 1447 0.98 20 23 0.01 0.91 10.6 0.5 2 23 1467 1488 1466 1489 0.94 21 23 0.08 7 7.8 0.0 1 23 1509 1531 1509 1531 0.97 22 23 0.0036 0.32 12.0 0.4 1 23 1537 1560 1537 1560 0.96 23 23 0.00017 0.015 16.2 0.4 1 23 1568 1591 1568 1591 0.96
Sequence Information
- Coding Sequence
- atgaGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGGCCTCGCATCAAAAATCAGGGATTGTGTGTCCGTGGAGATAAACGAAGACGACGACCTGCCAACTAATGTTTGCAGAAAATGCTGTGACAATGTGAATAACTGGCACATTTTTAAGGATGTATGTGAAAGGACACAAAACAAACTACAGACACTCATTAAAAATGATGGCAGCCAACTAGAAGAGGTGCAAATTAAAAGTGAACCTTTTTCTGATGAGGCTTATGATGATGGAGTGGTTATTGAAGCATCATACCCTGACCTTGAGTGTGCATCTACATCAAGTAAAGCCCAGCCAGAAGGCCCCCCTATCTTGGCATCGCTGGGTCTCACACCAAGGAGTGATAAGGGGATGGAGAGCGAAAATAATGAGGACGATGAAGAAATGAACGATGAAGACATGAACGATTCCGGTCAGCAATTTCCAAATGTACCTAACATGCCCGAGGTCTCTATCACTGTGATGCGTCCTACCGGTGAGACTTTGCACGCTCGTCAAGGGATTCAACAACTCGCTTCGAAGGATTGCCTCGTCTGCGGTCGCTCTTATAGATATTCACATAACGCCCGACGCCATGAACTCAATGCTCACAGTTTTGACAgatacacaaacaaaataacCACCAAGAAATCACACAATGTACACATGCACACAAAACTTAGACCCAATCCATTCAATCCCAAAGCGAGGCTCATGCCTAATCCTATTAGTCATAAAATGCAGTTAATTCCTAAAGGGATTAATTCAAAAATCATACAACATAAAGCTTTTGCCCCACCAAAACCTATACCAATTAAAACACCAAAGGGCGCCCAAAATAATTTGCCATATCCGCTTCGCATTAAGGCTCTAAAagacttacaaataaaaaaaaaagaaccgCAAATCCTTAAAACGTTGTTGACAACAAAACCCGAAGTTTTGGTTTCTGAAccagaaataattaattctggCCCGGGAAGTCCAGAAACTTTGATATCTGAGCCAGAAATAGCTTCGTTTCAAGTAGAGGCTATCCTTTCAGAACCAGATACTTACATTCAACAAGACGATGAAGATGTAGATGGTGATATGCAAAATAATCAAGGTCAAAATTACGACACTGTTGACATGGATTCTGAAAATGAGATTGAGATCGCTCGCCAACAAGAAAACGCTGTTGACGGCGAAGGCGACGGTGATGGCGATGATCACCTGGTTCATAACGAACAGGAGGAAGGCCATGAAATGGATCATTTagataatgatgatgaaaataTGGAAAGAAATCAAAGCGACAATGAGAATGATCAAATAGACTACAATGTCGATAGTGGAGACCGATTACAGATTGTCAACGATAACGAAGGAAGGGATGATGAAGAAAATGAACATGAAACCAAAGAAGGTGATGAAGCAAATGATGAACAGATGGAGTACAATCACGACGATGATGAAGACGAATTGCCTCCTATAGCCCCCGTGGTTGAAATCAATGAAGATATGCAAACAAATTCTTATAACAGTGAAGTAAATGACGAAGAGCTCGATGAAACAGCCGACCCTAACGACACAGCAGAGGATGTCAAAGAACTCGATCCTGATAAGCTATATGTAACCAAGACGCAGAGAGATTTCATACATAAATATCGGGATATTATCGAACAGATTAACACAAAACGATGCCTCTGTTGTGATAGGGAACACCCTCGCCGCAAAGCTGTCATACAACATTTGCAGAAAAACGGACACAAAGTTCCTAAACACACGTGTTACAATTGCGTTGTTACGTTCAGCCACATCGGCGCTCTGCTCAGTCACATGCGCTCCAACACTTGCACAGATTTATGGAAgattatttacaatgaaaatggCATCACCGAAGATTTAGTTCTGGAGGATGAACCTAAAGATACCAAAGTccaatataaagatatatttaatgcAAGGTCATATGCATGTAAATTATGTCCAGCGAAATTCCAATTGAAACAGTTTATTATGAAACATGTACTAGACGTACATGAAGATGGCCAGTCTCGCGTACAGCTCGTCTGTGTTCACTGTAATTCCAGATTCAAAGATAAGGCGTTGTGGAAGAGGCATATCCGCAACGGAGAATGTACCGTTTATATTTCATGCGATTTGTGCTCTGAAAGATTTGGTAACATGCAACATTTCAACGACCACGCATTAGCCGTACATGCGGGTAACTTCGAACAGTCTGATAATCAGAACAAATGTGTCGACGGAAGACCGACGGACTGTCCCATTTGTGGGAAGAAGAACAGTAGCTATCCGAATTTAGTTAAACATTTAAAGATTATCCACAGCGAGGAGAAACCTCATTACTGCCAGCACTGCGATTCTAAATTTGAACAAGCTGCTGATCTCAATAAACACATCTATATGGAGCATTCCGATAGAACATTAGGCGTGCAGAGCAACGAGCCCGATATGTCTCTCGTGAAGGAGGAAACGGAGGAGTACCACTACTCTTGCACAGAATGTAACGCCATATTCGAAACTGTCGACGCTTGGACGGATCATCAGGTGGCTGAACACAATCAAGTCGCTCACCACTGCGACCAGTGCGAAAAGAAATTCTTAAGACCATCAGAATTAGCGGAGCACAAGAATACGCATTTGAGGGTCAAATTTTATCCATGCAGCATTTGCTCCAATTCGTACAGCACACCCCAAAAGCTTTCTGAACATGTTCAGCAAAAGCATCCCGGAGCTGCGGGAGCATACGTGCCCATGGACTATGACTTTTTCTGCGACATCTGCATCAGGCCGTTTAAGAGCCGCCAGGCTTACTCAAACCACATGCGCATACACGCTAAAGTGCCGACCACGAATAGAAAACCCGGAGAACCGAAAGGATTCGCTCCGCAAATTGTCGGCAAACCGATTAGATCCTTCTCGATGGTACAAcctaattttctttctttcaaacCTAATTGTAATGTTCCGAATGCGCCTTACTCATGTGATATCTGCGGAAAAGGTTTCATGCATAAGAAAAACATTTGGAAGCACAAGAAAGTGCTGCACGCGGACCACGCCGGTGACCGAAACGACAGCGAAGAGAATACAATGCATGCCTCGACCGAAGAGGACGAATACAATTTAGACGAAAATGGCGCCGTTCTTTCGACACCTCAATTCAATAGTTTTAACTTTATGAATTTAACAAACAGCTTACAGCAGCAAGCCTCCCAAGATGCCACACCGTATTCCTGTGAGTTATGCTTCAAACGGTTTCCACTTCGAACAAGCTTGTGGAAACACAAACGCGCCAAGCATGGAATCATTAACGCCAGTGCCAGTGGTAGCTCAGATTCCCCAATAATGGCCGGAGAAGGCGGTAGATCGAGTTGCACGAtttgtaaaattacattttcagaCAAAAAGTCGTACTATCGCCACCGAAAGCACGTTCATAAGTCCTCAGCGCAGATGTGCAAAATATGCGGAAAACCTTTAAATTCCACATTAGAATTATATGAGCATCTCAAAGCTGCCCACGCTAGAGAGTTACTCGGATATAACGCGAGCCAAGGTCCCGTTAAACAAGATATTACCCAAGATTTAGAAGTGGAATATGATGGTGACCAGGATTCAGTAGACCCCAGTGCGGAATATCAAGCCCGTTACCCCTGCGACACCTGTGGTAAACAATTCGTTGGTTTGCTCGCGTTACAGAACCACCAATGTATAAATCAATTAGAGTCATCACCTCAGACCTTCGATTGCGAAATATGCCACAAGAGCTATACTTCTATTTCTGCGCTAAAAAGCCACCGCGGTTGGCATTTGCGTTCCCCGGACGGCAAGGCGGCCGCTAACAATTCCGGTCTGTGGATGCCTCAGCATAAAGTTACGACCAAGGTCAGTAAGCACGAAGTGGTCGACCCCTCGCAGCTTGCGCGAGTCACTCACACGACGCCGACCCCGACGCCGACGCCAACGCCGGCCAGCGTCGCCAAAAGGAGACTGCCGCCGGAAGTCGAAGTCACCGTTGTAAATCCCAACAAGAAATTGCGTTCTGACGACTCCGTAGAATTGGAACAGCAGAACAATTCCTCCACCGGAGCCGACGATAGATACTGCACCATATGCGACAAAGAGTTCACCAAACGAGCAGCCTACCAGCGTCACATGGATGAAGTGCACCAGCCCAACTCCGTGTTCTGTCCCGTCTGTGAGAAGAGTTTCACGCGCAAGTCGACGTTGATCGTCCACATGAAGAAACATTACGGCGGCGGCGAGAGCAGTTCCACCGCTGCGGATCAGAACGAAGACGATAGCTTGACGTGTGACTTTTGCGGAGCTCAGTTCATGAATGAAATCGATTTAAGAGCGCACCGGGCGAAGCATCACGGTGATGATTCAGGAGACTCTGAAGACGAGGGTACTAGTGTTCCTCCGCCGGGCGAGTTTACATGCGGGCAGTGCGGGGACGGCGTGGCCACACCTCGCGATCTGATAGCCCACCGCACTATGCACTCGACGCCCACCAAGTTCTACTGCAACATCTGCAAGGTGTACTTCGCGCGCGCTATCGACCTCTCTTCGCACACGCGCGCGCGACACGCAGACAACGAGAAGGTGTTCTTTCCGTGCGCGATGTGCGACAGATTTTACATGAACAAGAAGAGTTTGCAGCGGCACATCGAGATGGCGCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPGLASKIRDCVSVEINEDDDLPTNVCRKCCDNVNNWHIFKDVCERTQNKLQTLIKNDGSQLEEVQIKSEPFSDEAYDDGVVIEASYPDLECASTSSKAQPEGPPILASLGLTPRSDKGMESENNEDDEEMNDEDMNDSGQQFPNVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELNAHSFDRYTNKITTKKSHNVHMHTKLRPNPFNPKARLMPNPISHKMQLIPKGINSKIIQHKAFAPPKPIPIKTPKGAQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIINSGPGSPETLISEPEIASFQVEAILSEPDTYIQQDDEDVDGDMQNNQGQNYDTVDMDSENEIEIARQQENAVDGEGDGDGDDHLVHNEQEEGHEMDHLDNDDENMERNQSDNENDQIDYNVDSGDRLQIVNDNEGRDDEENEHETKEGDEANDEQMEYNHDDDEDELPPIAPVVEINEDMQTNSYNSEVNDEELDETADPNDTAEDVKELDPDKLYVTKTQRDFIHKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNTCTDLWKIIYNENGITEDLVLEDEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLVCVHCNSRFKDKALWKRHIRNGECTVYISCDLCSERFGNMQHFNDHALAVHAGNFEQSDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHSEEKPHYCQHCDSKFEQAADLNKHIYMEHSDRTLGVQSNEPDMSLVKEETEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSTPQKLSEHVQQKHPGAAGAYVPMDYDFFCDICIRPFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIVGKPIRSFSMVQPNFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADHAGDRNDSEENTMHASTEEDEYNLDENGAVLSTPQFNSFNFMNLTNSLQQQASQDATPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGSSDSPIMAGEGGRSSCTICKITFSDKKSYYRHRKHVHKSSAQMCKICGKPLNSTLELYEHLKAAHARELLGYNASQGPVKQDITQDLEVEYDGDQDSVDPSAEYQARYPCDTCGKQFVGLLALQNHQCINQLESSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTTKVSKHEVVDPSQLARVTHTTPTPTPTPTPASVAKRRLPPEVEVTVVNPNKKLRSDDSVELEQQNNSSTGADDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLIVHMKKHYGGGESSSTAADQNEDDSLTCDFCGAQFMNEIDLRAHRAKHHGDDSGDSEDEGTSVPPPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFYCNICKVYFARAIDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155687;
- 90% Identity
- iTF_01143273;
- 80% Identity
- -