Pgig010503.1
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- TFDP1
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000001.1:4277649-4283445[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-23 1.2e-19 69.9 0.1 2 65 181 260 180 260 0.97
Sequence Information
- Coding Sequence
- ATGTCCCAGAAACCTAGTATAGTAAAATTCCTTATACATGACGCCAATGGACAACCGCAAATGGTAAAAGTAGTACAAAATTCAAACAACCCCACTACTATCCCAATCAAAGTCAAAACAAATCCTGTGAAAATATATAAACTTCCAACTGTTGCTGAAGGAAAAATAAAAACTCAGACACCTGTCTTTTGCCCAATTAAAGTTACTTCTGGGATAAAGTGTGCATCAAAACTGGTGCCAGTTCCTATTGAAACTTTGACACATTTACAAAAAATTGTGCCTAAAACTGAACCACTTGAAGTGAAAGTCGAGTTGGAACCTCAGGAACAATATCAAGATCACATATTAGAACAGCAAACTGTACAGACCGTACCAAAATTAATTCCAATTCTACCCAAACCTGAGTCCCCCGTCAAATCAAATAGAAGATCATCTAATTTGACATCTCCGATGTCTCATGCTTCAAGAAGAAGACATGATTCGGATAATGATCCCCCGGCTGAGTACACAACAAAGCGACGTAAGCACGCTGATAAAGTGGGTAAAGGATTGCGACATTTTTCTATGAAAGTTTGCGAGAAGGTGAGGAACAAAGGATTCACGTCGTACAACGAAGTTGCGGACGAATTAGTGTTAGAGTTCACGGCCGGGATGCACAGCTCCGCTGACACACAGCAATATGATCAGAAAAATATTCGACGAAGAGTATACGACGCGTTAAACGTGTTAATGGCAATGAATATAATATCAAAGGAAAAGAAAGAGATCAGATGGTTGGGTCTGCCCACCAACTCTGCGCAGGAGTGCGCCGCGCTCGAGAAGGAGAAGCAGACCAAGCTGGAACAGATACAGAAGAAGACTCAGCAATTACAAGAGCTTATATTACAGCATATATCATTTAAAAGCCTAATAGAGAGGAATAAAGAAACAGAAAAGAAGGGTATAAAACCTTCACCGTCGTCTGCCATCCATTTACCTTTCATAGTTGTAAATACAAGCGACAAAGCATTGATAGACTGCAGTATATCAAATGACAAGACAGAGTACATGTTTAACTTTAACAAGAGGTTCCAGATACATGATGATATAGATATATTAAAAAGAATGGGCCTTCTCTATGGACTAGACAAAGGAGAATGTTCAGAAGAAGAATTAAGAAAAGTAAAAAATATGGTACCAAAATCCTTGGAAGTGTATGTTGAACAAATGGGTAGAGCTGAAAATTGCACTCTAAGTAATTTATTAGACGAGGAGGAACTTGATGATGACAATGAAGATGATGCTTTAGAGGTGGAGGTGAAGGACGAGCAGGAAGAGGAGGAGGAGGAAGACGGCAACGAGTACAGCGGCGACAGCAGCGACGTCGACGTGTAG
- Protein Sequence
- MSQKPSIVKFLIHDANGQPQMVKVVQNSNNPTTIPIKVKTNPVKIYKLPTVAEGKIKTQTPVFCPIKVTSGIKCASKLVPVPIETLTHLQKIVPKTEPLEVKVELEPQEQYQDHILEQQTVQTVPKLIPILPKPESPVKSNRRSSNLTSPMSHASRRRHDSDNDPPAEYTTKRRKHADKVGKGLRHFSMKVCEKVRNKGFTSYNEVADELVLEFTAGMHSSADTQQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWLGLPTNSAQECAALEKEKQTKLEQIQKKTQQLQELILQHISFKSLIERNKETEKKGIKPSPSSAIHLPFIVVNTSDKALIDCSISNDKTEYMFNFNKRFQIHDDIDILKRMGLLYGLDKGECSEEELRKVKNMVPKSLEVYVEQMGRAENCTLSNLLDEEELDDDNEDDALEVEVKDEQEEEEEEDGNEYSGDSSDVDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01138759;
- 90% Identity
- iTF_01144353; iTF_01138759; iTF_01149370; iTF_01145097; iTF_01143660; iTF_01147219; iTF_01148631; iTF_01140030;
- 80% Identity
- -