Pelw000255.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio elwesi
Gene Symbol
-
Assembly
GCA_029641285.1
Location
CM056336.1:4049149-4053876[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.12 10 7.2 3.8 2 22 194 214 193 214 0.96
2 15 0.13 11 7.1 0.5 2 23 468 489 467 489 0.96
3 15 0.043 3.8 8.6 1.8 2 23 574 595 573 595 0.96
4 15 0.11 9.7 7.3 0.4 1 23 603 625 603 625 0.95
5 15 0.064 5.6 8.1 3.6 1 23 660 682 660 682 0.95
6 15 4.8e-05 0.0042 17.9 4.2 1 23 690 712 690 712 0.99
7 15 0.05 4.4 8.4 1.9 1 23 795 817 795 817 0.99
8 15 2.5 2.2e+02 3.1 1.9 1 19 873 891 873 895 0.91
9 15 7.5 6.6e+02 1.6 0.1 1 23 901 923 901 923 0.89
10 15 0.0055 0.49 11.4 0.7 1 23 991 1013 991 1013 0.95
11 15 0.016 1.4 10.0 0.9 1 23 1019 1041 1019 1041 0.96
12 15 0.0046 0.41 11.7 2.6 1 23 1130 1152 1130 1152 0.97
13 15 0.00012 0.01 16.7 1.4 1 23 1158 1180 1158 1180 0.99
14 15 3.7 3.2e+02 2.5 1.4 1 23 1272 1294 1272 1294 0.96
15 15 0.015 1.3 10.1 3.7 1 23 1305 1327 1305 1327 0.98

Sequence Information

Coding Sequence
ATGGGTTTACAATATGCAGAAAGAGACTTAGTCAGTTGCAATAGTGATTCTAATGATGCAACTGCTTCTGAAACATCTTCAAAGAATGATTTAAACTTGACGCGTACGAGCCAAAATCAAGAATCGACATTAGAAGAGTCAAAATCGCACAAACAAAGCCGAAAAATACCCAGACCAATTCCACAGCTCATACCGCTCAATTCATCAACtccaaatcaaaataaaacatcgggtgaaccgccgatgaaaaaatttaaagagTCAATATCAAGCGATTCACCAGATTCGAGTAATTCAAATAGACTAGACTGTCTACCGCCAGACGTTACATTCACACCGGTTGTTAACAATGCTTCAGTTGCTACAAAAGAAACAACGACTCGCAAGAAAAATGAatcattttttgataaattaaaagaaagattgCTTACAGAAACAGGAGAAGAAGGATCGCTAAGATGTAAAAACTGTGGATTCGAAAGCAAATGTCTATCGGAACATTCGGTCCATGAAAAAACGTGTTCCACTCAATCCAATAGACTTCATACCAATACCTTGTTGTCGAGCTTAAGTTCAACAAGATGTCAAAACTGCAGACACAGATGCAAATCTAGTGCAGACCTTTACGTGCACATGAAAACTTGCAAGAAGAACGATGATGGTGCTAAAGAAATTACAACAGAAACTCAAGACAGCAATGAAGCCGTATGCTCAAATCCAGAGAAAGAGGTTGAGCCGCATCCGATGGAGAATGTTGTGTTCGTCTGGAATAACATCAATACAGAGGCAAGTAAGTTCGACACACCACTAGATATAAATATCAACGATGACTCCACGCTGCCAGAACCCCCACAAAGTTTTGACTCTGAAAACATAGATGAAAATGAAGGTATGAACTTGTCACCGAGTCAAGCCGTTGGTAAAAAAGTATTCAAATGCCCACACTGTCTATTTTGGGCTTCGACTGCGTCCAGATTTCACGTTCATATAGTAGGACATTTAAATAAGAAACCGTTCGAATGTTCTCAATGTAAGTACAAATCTAATTGGAGATGGGATATAACGAAACATATCAAATTAAGGTCTGCTAGGGATCCTAATCACACCGACGCAAAAGTCCTAATGACAGATGAAACAGGGAGACGGAATTacagtaaatataataagtttttgGCGATGCCGATATTAAATGAGAATGGGGAGAACGAATTTCATTATATTGAACAGAATACTAACGTCGATGCTTCATTAGATATCGACGAAAGTTACAACGATGTAAACGAACTTACAAACGCGTCAATAGAATTGCAACCTCTCAATTTGCAAACTCAACATGGCGACTACAAATACAGTCTCGACAATAGAAGTGAAGATATGAAGAGACCTAAAAAGACTTTAtggaaatgtaaaaaatgcAATTACAGAGACTCGTCCAAAGAAGCTTTGTTGGAACATGTCCGGGAACATTCTAAGCCTACGGCGTACGGTTCAGACGATTCAAAGTCTCAGCAAGGTGCTAGCGGAGCGGGCAAGAAGCCTGATAGTACTCTGGACCCAGCGGACTTGGCGTATCGATGTGGTCATTGCAATCAGTTATCTAATTGGAAACATGTTATACAGCGGCACTGCAGACTTAAACATGACGGTAATATAAAGGTCGTAACCACAGTGAAGCCAAAAGCGGAAGGATCGAGCTTGTTGAATGACTCCATAACGGATTCCTGCACGAAGTGCCCTTTTAAGAGTAACGACAGAACAATGCTAATCATACACATGCAACACCACCAGCCGTCACCACAGTCCATATTCAAGTGCTATTTTTGTCCATATTTTGTGAAAGACGAGCAAGAACTGGTCCAACATCTCGTTCTACACGGGATCACCGACCCTGAAGATTATATAGCAAAGGCAATGGGTTGCAAATCACCGCCACCGCTGAATGACGTACAAAGTATCCAACCGTCTTCGACTAAGCGACATAAATGCACGGAGTGCCCGTACGAGACGAACAGCAAATCTCAGTTTATGTACCACGAGCAATTCCACCGGCTTCCTGCAGACACTCCTTACAAATGTCCCGAATGTAACTACAGTGTCTCGAAAAGACATCTTCTTCATCAGCACATGAGGGTGCACGGTATAATATCCAAAAAAAGTGAATTCGAATCAGAGTTTGAAGCATCCACTTCGAATTCATATAAGACTGAAAATAAATCTGACTACAATCTTGAAGAAATTCCCAACGTGTGGGTCTCGGCGAAGAACGAGTTTCACAAAATGTACAAATGTCGATATTGCTCATACGTCAATACTCAGAAATGTAAAATACCGAATCATGAAAAAATACATTGCGTCGTAAACGGACACAACGAAATACTAGTGTACAAGTGCTTAGATTGTAAATTTACTTGTGATAACGCTGGAAGATTAGCGGAACATTCGAAAACACACGGTGAAATATACGGCCGGATCTATTGTCCCGTCGAGCCTAATGTTCCTGATGAGGATCAGATATCAAAATTACGTAAGGTCATcgaaaaagaaaaactaaatgCTGTCGATGAATTCATTAAAGAGGATTGTGTGGCTCCTGAAAATAaggtaataaaaacattacatttttgtcAAAAATGTCCAGCGCGTTATTTCTCGGAGGGTGAGTTAAAAGTACACGACAAATTTCACGATCTCGCATTTCCATACAAATGTAAGAGTTGTGAATTTTCTGTGCTTCAAGAAAATGAATTAGCTGCACATGCATTTGTTCACTCTGATGAATATCATACTAAAACTAAAATGCTTAAGTTCATCCATAATACGGATCCAGTGCACCCCGAGCCACGGTTGGAGCTCGTCCATTGCGCAGCGACATCCGAAATAAATTGGGTGGTTACCCAACCTGGTAAAAATTATGACAGTATGGATATTTCGTCTAAGAAGTCTCAAGATGGCAAGCATGTCCCAAAACAATATCTTTGCAAAGAATGTCCAGCAAAGTTCTTTAAAACATCAGCTCTGAACTATCATATGAGCTTACATGGCGGTGACGGTGAACACAAATGTAAAACATGCAGTTACGCCGTCAAAAATATTGGAAATTTGGCCAAACACGAGTTGTTACATGAGACGGAAGGTAAAGCGACCTGTGATTATGAATCCGGTGAAGATATAGATTACAAAAATGTCCCTTTATCAGGTACTGATCTATTTCAAAGAAAGACGGAGGCTCAAAAAAGAGTTTTAAGTGATAAAGATAAGCTCGTGAAACCTAATGACCATTTCCCACCGGTGCTTCAAGCAGATCCTCAATTTGGATATTTGATGCATGGTAACCCAGAGTTTATATACCCGACATATCTAAAAAATGGACGACAAAAGGAGAAGCGATACAAGTGCCATAAATGTCCATCGGCGTTTGAGAAAAGGGAACAGTATAAAATTCACTTATCATTGCATGGTTCAAAGCAGCGATATAAGTGTGAACTTTGTGATTACTCTGTAAAGTATTATGCTAATTATGTTCAACACATGAGGAAGCATCAGAAAAACGATGAAGCTGTAGCTGAAAGAAGAAAAGGTAGCAATGGATACCTTGAATCAGAAGAGCCTACAGGACACAAGAAAGAGGAAGCTACGGAGCATGTTAAGTTGGCTATTAAAACTATGCCTaaaggtgtaccgaaaagtgaCTTTCAACAATTCTCGATAAGTGATCAACAAACACTTAGACTATTACAACGGAGATGCGCTTTAAATAATTCTGTAAATGACGCAAACCAAACTGATGCGGCGCCAACGAAGGATCGAAAATTACATCCATGTTTCTTGTGCCCATATACGAACCAGCGTCAGGATGCCCTGGGTAACCATTTCAGGCGGCATGATAAAAATGACGTATTTAATAATGGCAACCACAAATGTTCATTTTGCGACTTGGCCGTCGTCCAGTCGCATTTCTTACGGGACCACTTGAAAACTCATTTTAACTACCAAAAAACTCTTACACCCGAATGTTATGTTGCCAATGAAGAAGTCAagtttacaattacaaaattagaTGAAGAAGAAAGTGTTACTGATCTCAAATTAGATATGCAAAGCAAATTAGATATATGGAATGATGAAaaagtatttgtaaaaataaaaacaggagAATTATTGGCGGAATGA
Protein Sequence
MGLQYAERDLVSCNSDSNDATASETSSKNDLNLTRTSQNQESTLEESKSHKQSRKIPRPIPQLIPLNSSTPNQNKTSGEPPMKKFKESISSDSPDSSNSNRLDCLPPDVTFTPVVNNASVATKETTTRKKNESFFDKLKERLLTETGEEGSLRCKNCGFESKCLSEHSVHEKTCSTQSNRLHTNTLLSSLSSTRCQNCRHRCKSSADLYVHMKTCKKNDDGAKEITTETQDSNEAVCSNPEKEVEPHPMENVVFVWNNINTEASKFDTPLDININDDSTLPEPPQSFDSENIDENEGMNLSPSQAVGKKVFKCPHCLFWASTASRFHVHIVGHLNKKPFECSQCKYKSNWRWDITKHIKLRSARDPNHTDAKVLMTDETGRRNYSKYNKFLAMPILNENGENEFHYIEQNTNVDASLDIDESYNDVNELTNASIELQPLNLQTQHGDYKYSLDNRSEDMKRPKKTLWKCKKCNYRDSSKEALLEHVREHSKPTAYGSDDSKSQQGASGAGKKPDSTLDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGNIKVVTTVKPKAEGSSLLNDSITDSCTKCPFKSNDRTMLIIHMQHHQPSPQSIFKCYFCPYFVKDEQELVQHLVLHGITDPEDYIAKAMGCKSPPPLNDVQSIQPSSTKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHMRVHGIISKKSEFESEFEASTSNSYKTENKSDYNLEEIPNVWVSAKNEFHKMYKCRYCSYVNTQKCKIPNHEKIHCVVNGHNEILVYKCLDCKFTCDNAGRLAEHSKTHGEIYGRIYCPVEPNVPDEDQISKLRKVIEKEKLNAVDEFIKEDCVAPENKVIKTLHFCQKCPARYFSEGELKVHDKFHDLAFPYKCKSCEFSVLQENELAAHAFVHSDEYHTKTKMLKFIHNTDPVHPEPRLELVHCAATSEINWVVTQPGKNYDSMDISSKKSQDGKHVPKQYLCKECPAKFFKTSALNYHMSLHGGDGEHKCKTCSYAVKNIGNLAKHELLHETEGKATCDYESGEDIDYKNVPLSGTDLFQRKTEAQKRVLSDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQKNDEAVAERRKGSNGYLESEEPTGHKKEEATEHVKLAIKTMPKGVPKSDFQQFSISDQQTLRLLQRRCALNNSVNDANQTDAAPTKDRKLHPCFLCPYTNQRQDALGNHFRRHDKNDVFNNGNHKCSFCDLAVVQSHFLRDHLKTHFNYQKTLTPECYVANEEVKFTITKLDEEESVTDLKLDMQSKLDIWNDEKVFVKIKTGELLAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01141287;
90% Identity
-
80% Identity
-