Pdar001304.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- -
- Assembly
- GCA_013186455.1
- Location
- QDHC01006236.1:118602-122738[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0028 54 4.1 0.0 24 52 211 239 199 240 0.89 2 5 0.00037 7 6.9 0.9 22 48 237 263 231 268 0.89 3 5 0.0042 80 3.6 0.2 26 51 270 295 264 298 0.87 4 5 0.00074 14 6.0 0.0 15 47 321 353 316 358 0.88 5 5 2.3e-05 0.45 10.8 0.3 21 46 355 380 351 384 0.90
Sequence Information
- Coding Sequence
- atgaaaACCAACATATGTCGAATTTGCCTAGAAGATGGAGCTTTATATCctatttttgaaaatgttgAACTTAACATTCATTCAAAGATTACAACTTGTTTGCATGCTACCATTGAAGACGTAGAAGGATATCCGCgtcaaatatgtaataattgcAATGAAACTTTAGATGTACTTtacaatttcataaatgtatttttagagAGTTGTAAGACATTAGAAAATAAGTTActcgatattaaaatagagAACGACGCAAATAGTCATTATGAATCAGATTTTGATAcagcaattaatattaaagaggAGGCTCCAGATCTTAATAATTTGGACGATAAAAAAACTTCAGAAATAACAACACGATCTAAGACCAggagtattaaaaataaaagaaaaatagttGTAAAAAAGGTGTTAAGTAcgaaaaaaacgaaaataaagtGTGATAGAGACAAAAGATATGCAGTAGCAAGTTCTATTTTAGAAGGTGAATTTACATGGAGCGGCGAAGAATGGTGtttaaaaaataacaaagcaccaaaaaactatcaaaatgAACAGAAAGCTGTtcaagaaactaaaaaaacaaatatagtaaaaaaaagagGAATAAAAGAGAGGAAACCAGGTCCTAAACTATGTGATCTGTGCGGTGCAGTGTTTGATAAAGACAGTAAACTATCTGCACATAAGAAAAGGTTACATTTCAACACTCCAGTTAAATGTCCCCTCTGCTCACGGGCAGTGTCCtcggaatattatttaaatatgcataTGGAAAGAAGACATAGAAATAATAGGAACATACAGTGCAACTCGTGCGATGCAAGATTTGCAtacaataaagatttaaaaaggcACATGAATGCTGTTCatatgaaaaaaagaaaaataaatcaaatatttacttgtGATATGTGCGATAAGACTTATAAGTGTATACAGTCACTTACAATACATAAGCGATCTATTCATACAGGGGAGCGACCGGAAAAATGTACAGTTTGCGGCGCCGGTTTCTACCATATTGTGTATTTGAGGGAACACATGCGGCTCCATACGGGTGAAACTCCATACAAATGTCCTATTTGTGACCGGGGATATGCTCAGCGAGGCAACATGAGGAGCCACCTTCGGATACACAGGAAGTCGGAGTTAGATGCTGAtatgttaagtaaaataaaaccaagaCTTCTTAGGTTTCTTAAAGCTTAA
- Protein Sequence
- MKTNICRICLEDGALYPIFENVELNIHSKITTCLHATIEDVEGYPRQICNNCNETLDVLYNFINVFLESCKTLENKLLDIKIENDANSHYESDFDTAINIKEEAPDLNNLDDKKTSEITTRSKTRSIKNKRKIVVKKVLSTKKTKIKCDRDKRYAVASSILEGEFTWSGEEWCLKNNKAPKNYQNEQKAVQETKKTNIVKKRGIKERKPGPKLCDLCGAVFDKDSKLSAHKKRLHFNTPVKCPLCSRAVSSEYYLNMHMERRHRNNRNIQCNSCDARFAYNKDLKRHMNAVHMKKRKINQIFTCDMCDKTYKCIQSLTIHKRSIHTGERPEKCTVCGAGFYHIVYLREHMRLHTGETPYKCPICDRGYAQRGNMRSHLRIHRKSELDADMLSKIKPRLLRFLKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01140450;
- 90% Identity
- iTF_01140450;
- 80% Identity
- iTF_01140450;