Pdar012025.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- bab1_1
- Assembly
- GCA_013186455.1
- Location
- QDHC01006681.1:660880-674121[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-18 1.5e-14 53.5 0.0 1 43 142 185 142 187 0.95 2 2 2.5 5.9e+03 -2.8 2.0 6 15 279 288 275 289 0.82
Sequence Information
- Coding Sequence
- ATGGAAAAAATATCCATCGGATACCGCATCGACGCACGCTTAAACAATCAAACGGGGAACAAAAAGACAGTAATGTGGAAATGGATAATGCAGGAGCGGCCGGGGCGAGGCGCGGTCGCGGTGCGAGCGGGCGCGCTGCACTCACATCtgcactttataaaaataaacacagccTCACACCGCTCAAGGGGTTGGGCGGAGGACGGCGACGGACGGTGCCGACGCCGCCTCTACTCGCCGTGTTTACCGTCCGCGCACGCTAAATTGCTCGAGAACTCGCATGCCTGGCTCGGAGCCTCTACATCTTCGATTGCAGATAGCTACCAGTACCAACTGCAGTCGATGTGGCAGAAGTGCTGGAACACGAACCAGAGCCTGGTCCACAACTTGCGGTTCCGCGAGCGCGGTCCCCTCAAGTCTTGGCGGCCGGAGACCATGGCCGAGGCGATCTTCTCGGTCCTGAAAGAGGGACTGTCCCTGTCGCAGGCCGCTCGGAAGTACGACATACCGTACCCGACGTTTGTGCTCTACGCTAACAGAGTGCATAATATGCTCGGCCCCAGCGCCGATGGAGGGGCAGATCTGAGGCCCAAAGGGCGCGGCCGGCCGCAGCGCATCCTGCTGGGCGTGTGGCCCGACGAGCACATCCGCGGCGTCATTCGCGCCGTCGTCTTCCGAGATACCCATGCGCACTCCGCTCACCACATCAAGGAGGAGGTCCTTCCTTATCCTTCTATCACGGATGGCATGACCGTGGGCGTACCGCCGAACGCATACGGATCCGTGGCCTGCGGAAATGGACGCGACGGCGGCGTGTCGCCGAATGCCGCCGCCGCGGCCGCAGTCGCCGCGGTTGCGCACGGACTGCGCCGTCAGATGTGCAACATGGTGGTGGCGGCGCAGAGACCGCCCGACCACCCTCAGCACCTCAGCCTGCCGCCGCTGCCGCTGCAGTCCCCGCGCCTGCCGTCGCCGATGTCCGCCGGTCTGGAGTCCCCGCTGTGCTCCCCGCCTCCGCCGGGCCACGCTTTGGAGCCGCCGAAGCCGGCTGACCCGTTCCGCCCGTTCGCTTCGCCGCGCCCCGATAGCCGCTACAGCGAACGCGATTCGGTCTCCGACCTCACAGAGATGGGCCCGCCCAAGACACCGGTGGGCATCGCTAAGAACGGAAAGGATCTCGCTTCGCCGCTGCCCGTGAAGATGGAGCCGCCGCCGTCGGAGGCGCGCGCAGAGAACATCTGA
- Protein Sequence
- MEKISIGYRIDARLNNQTGNKKTVMWKWIMQERPGRGAVAVRAGALHSHLHFIKINTASHRSRGWAEDGDGRCRRRLYSPCLPSAHAKLLENSHAWLGASTSSIADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAHSAHHIKEEVLPYPSITDGMTVGVPPNAYGSVACGNGRDGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDHPQHLSLPPLPLQSPRLPSPMSAGLESPLCSPPPPGHALEPPKPADPFRPFASPRPDSRYSERDSVSDLTEMGPPKTPVGIAKNGKDLASPLPVKMEPPPSEARAENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281233;
- 90% Identity
- iTF_00957881;
- 80% Identity
- -