Pcly007197.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio clytia
Gene Symbol
sip1
Assembly
GCA_018247735.1
Location
DWGS01000871.1:19570-24214[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.1e-48 1.5e-44 154.2 2.6 6 224 370 570 365 572 0.95

Sequence Information

Coding Sequence
ATGTCTGATGATGAGGTGATACGTTTTGAAATAACGGATTATGATTTGGACAATGAATTCAATCCTAACAGGCAGCGAAAAGCTAAGAAAGAACACCAGATTTATGGTGTTTGGGCAAAGGACAGTGATGAGGAAGATAATGAAGACAATATCAGGCAGAGGTCTCGCAAACAGAAAGACTTTACAGCACCAATTGGGTTTGTGGCGGGTGGAGTTCAGCAAGCGGGCAAAAAGAAAGAACCcaataaagAATTACAATCAAAGGAAGCATCAACATCTAGACCGACGATAGTAGACAGTTCTGACGAAGAAGTTAATGATGAACCTCTACCTATGGACACCGCTGGTATTAGGAGACAAGGGCAAGGGTTGAAGCCTAACAACCTTGGTGGTAGTGTTGGAGCGTGGGAGAAGCATACAAAAGGCATTGGTGCTAAGCTGTTACTACAGaTGGGTTACCAGCCCGGTAAAGGTCTCGGTAAAGAGCTTCAGGGTATATCTGCACCTGTAGAAGCAACAGTGAGAAAAGGGCGAGGAGCTATTGGAGCATATGGACCAGAAAAGTCAACAcaAAAAGCTAAGAAGGAAGAGGAACGGCGACTTAAGGAGAAAGAGGAACAAGAGAAGGGTACCTCGGAGAAGAATTACAACTGGAAGAAGTCCCACAAGGGCCGCTACTTTTACCGGGATGCAGCGGATGTCATACAAGAGGGTAAACCCACGATGCATACTATTGGCAGTAGCGAGTTGGCTAGAGTGCCGGTGATAGATATGACAGGTAAGCAGAAGCGGGTGCTGAGCGGCTACcacgcgctcgccgccgccgcgccgcgctaCGAGCACGAGCCGCGCCGCCAGCTGCGACACTTCTCCGCGCCGCAGCTCACGCACAACCTGCAGCTCGTCGTGGACAGCTGCGAGcaagACATCATCCAAAATGCCCGTGAACTGCAAGCGGCAGAAGATGAAATAGTCGTCCTTGAAAGAGATTTAGAAGAGTGCAATATAAAACTGAAAGAACAAGACGTAGTGTTGGACAAAGTCCAAGCCATAACACAAAGGATAGAAGAGTTGAACAGACCAGATGTATCTCTAGAGAAATCGTATGAAGTTCTTGGTGATTTGATGGAGTCGTTTCCTCTGGAATACGAAATGTTTGGTCTCGGGACTATCGGAGGAACAATTGTGAGCCCTTTGATCAGCGCGCTACTGGCGCAGTGGGAGCCGCTTCAGTGTCCCGAGGAACCAGTGCCGATCTTCCTCAAGTGGAAGAAGCTGCTAACCGAGCCGGCGTACAACAGTCTACTCTGGCAACACTTTATACCAAGGATTACTTCTGCCGCCGAGATTTGGAATCCACGTACGCCAGAGCCGATGCTGGCGGTCTTCCAGAAGTGGACGCCCGCATGTCCCGAGTGGATCCTGCAGACGTGCGCGGCGCGGAGCGTGGTGCCGCGCCTGCTGGCTGCCGTGCGCGCCTGGGACCCCACGGGCGACACCCAGCCCCTGCATCACTGGGTGCTGCCCTGGCATGAGTTAGCAGGGTCTGAGTTGAACACCGCCACGTACCCGCTGATCCGGTCCcggctggcggcggcgctgtCCGCGTGGCACCCGGCGGACGGGTCGGCGCGCGAGCTGCTGGCGGCGTGGCGCGGCGCGTGGGGCCCCGCCCTACGCCCGCTGCTGCACCACCACGTGCTGCCGCTTGCCCAA
Protein Sequence
MSDDEVIRFEITDYDLDNEFNPNRQRKAKKEHQIYGVWAKDSDEEDNEDNIRQRSRKQKDFTAPIGFVAGGVQQAGKKKEPNKELQSKEASTSRPTIVDSSDEEVNDEPLPMDTAGIRRQGQGLKPNNLGGSVGAWEKHTKGIGAKLLLQMGYQPGKGLGKELQGISAPVEATVRKGRGAIGAYGPEKSTQKAKKEEERRLKEKEEQEKGTSEKNYNWKKSHKGRYFYRDAADVIQEGKPTMHTIGSSELARVPVIDMTGKQKRVLSGYHALAAAAPRYEHEPRRQLRHFSAPQLTHNLQLVVDSCEQDIIQNARELQAAEDEIVVLERDLEECNIKLKEQDVVLDKVQAITQRIEELNRPDVSLEKSYEVLGDLMESFPLEYEMFGLGTIGGTIVSPLISALLAQWEPLQCPEEPVPIFLKWKKLLTEPAYNSLLWQHFIPRITSAAEIWNPRTPEPMLAVFQKWTPACPEWILQTCAARSVVPRLLAAVRAWDPTGDTQPLHHWVLPWHELAGSELNTATYPLIRSRLAAALSAWHPADGSARELLAAWRGAWGPALRPLLHHHVLPLAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00840309;
90% Identity
iTF_01143106;
80% Identity
-