Basic Information

Insect: Papilio bianor
Gene Symbol: RAB26
Assembly: None
Location: HiC:4399344-4414982[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0064 0.42 11.0 1.1 2 23 455 477 454 477 0.92

2 23 0.22 14 6.1 0.3 1 22 870 891 870 891 0.95

3 23 4.3 2.8e+02 2.1 0.3 1 22 933 954 933 956 0.82

4 23 0.0041 0.27 11.6 0.6 2 21 966 985 965 986 0.94

5 23 0.43 28 5.2 0.3 2 23 994 1016 993 1016 0.89

6 23 0.0069 0.46 10.9 0.1 3 23 1037 1058 1035 1058 0.96

7 23 0.0012 0.08 13.2 2.5 1 23 1064 1087 1064 1087 0.95

8 23 0.08 5.3 7.5 0.0 1 23 1113 1136 1113 1136 0.90

9 23 0.012 0.79 10.1 3.4 1 23 1141 1163 1141 1163 0.97

10 23 0.0045 0.3 11.4 0.3 1 23 1169 1192 1169 1192 0.95

11 23 0.0015 0.098 13.0 1.3 1 23 1205 1227 1205 1227 0.97

12 23 0.00011 0.0075 16.5 1.8 1 23 1276 1299 1276 1299 0.97

13 23 0.0032 0.21 11.9 1.7 1 23 1362 1385 1362 1385 0.96

14 23 0.0007 0.047 14.0 2.1 2 23 1409 1431 1408 1431 0.95

15 23 0.055 3.7 8.0 0.1 2 23 1437 1459 1436 1459 0.93

16 23 0.0054 0.36 11.2 0.2 1 21 1502 1522 1502 1523 0.95

17 23 0.00027 0.018 15.3 1.0 1 23 1533 1555 1533 1555 0.93

18 23 5.6e-05 0.0037 17.4 0.3 2 23 1647 1669 1647 1669 0.93

19 23 3.9e-07 2.6e-05 24.2 1.1 3 23 1676 1696 1675 1696 0.98

20 23 0.022 1.4 9.3 0.0 3 23 1716 1736 1714 1736 0.95

21 23 0.077 5.1 7.6 0.0 1 23 1756 1778 1756 1778 0.97

22 23 0.0035 0.23 11.8 0.4 1 23 1784 1807 1784 1807 0.96

23 23 0.00016 0.011 16.0 0.4 1 23 1815 1838 1815 1838 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0064	0.42	11.0	1.1	2	23	455	477	454	477	0.92
2	23	0.22	14	6.1	0.3	1	22	870	891	870	891	0.95
3	23	4.3	2.8e+02	2.1	0.3	1	22	933	954	933	956	0.82
4	23	0.0041	0.27	11.6	0.6	2	21	966	985	965	986	0.94
5	23	0.43	28	5.2	0.3	2	23	994	1016	993	1016	0.89
6	23	0.0069	0.46	10.9	0.1	3	23	1037	1058	1035	1058	0.96
7	23	0.0012	0.08	13.2	2.5	1	23	1064	1087	1064	1087	0.95
8	23	0.08	5.3	7.5	0.0	1	23	1113	1136	1113	1136	0.90
9	23	0.012	0.79	10.1	3.4	1	23	1141	1163	1141	1163	0.97
10	23	0.0045	0.3	11.4	0.3	1	23	1169	1192	1169	1192	0.95
11	23	0.0015	0.098	13.0	1.3	1	23	1205	1227	1205	1227	0.97
12	23	0.00011	0.0075	16.5	1.8	1	23	1276	1299	1276	1299	0.97
13	23	0.0032	0.21	11.9	1.7	1	23	1362	1385	1362	1385	0.96
14	23	0.0007	0.047	14.0	2.1	2	23	1409	1431	1408	1431	0.95
15	23	0.055	3.7	8.0	0.1	2	23	1437	1459	1436	1459	0.93
16	23	0.0054	0.36	11.2	0.2	1	21	1502	1522	1502	1523	0.95
17	23	0.00027	0.018	15.3	1.0	1	23	1533	1555	1533	1555	0.93
18	23	5.6e-05	0.0037	17.4	0.3	2	23	1647	1669	1647	1669	0.93
19	23	3.9e-07	2.6e-05	24.2	1.1	3	23	1676	1696	1675	1696	0.98
20	23	0.022	1.4	9.3	0.0	3	23	1716	1736	1714	1736	0.95
21	23	0.077	5.1	7.6	0.0	1	23	1756	1778	1756	1778	0.97
22	23	0.0035	0.23	11.8	0.4	1	23	1784	1807	1784	1807	0.96
23	23	0.00016	0.011	16.0	0.4	1	23	1815	1838	1815	1838	0.96

Sequence Information

Coding Sequence: ATGTGGAACCCGAACGCAACAGACAACAGACCGATGGAGAAGAGAGTGGTAATAGGAAGGGTGCGACCAACATGGGCAAGGAACCTCCCAGATGCGAGGGAAGAGGACGACAAGAGTGATCAAGAAGGTGTGATGCCGCACAGCGAGCCCCCCTCCCCCACTGATACATGGGACCAGCAGAACAAACAAGAAGATAAATTCGATGTATTTGGAAAGGTTATGCTGCTAGGAGACAGCGGCGTGGGCAAGACCTGTATGCTGGTGCGGTTCCGCGATGGCACATTCCTCGCTGGGAATTATATATCCACAGTTGGCATCGACTTTCGGAACAAGGTAGTGACGGTGGACGGCGTCAAAGTGAAGCTTCAAATTTGGGACACGGCGGGACAGGAGCGCTTCCGTAGCGTCACACATGCGTACTACAGAGATGCACATGCTCTCCTACTTCTCTACGACGTGACCAACAAGACGAGTTTCGACAACATTCGTGCATGGCTGGGCGAGATACGAGAGTATGCACAAGACGATGTTGTCATCATGCTTCTGGGAAACAAATCGGACAGCGGCCTAGAGAGGGCAGTGCGGCGCGAGGAGGGGCAGCGGCTGGCGCGAGAATATCAAGTCGCGTTTATGGAGACGTCAGCTAAAACCGGACTGAACGTGGAAGCGGCGTTCGGCCATGTGGCGCGGGCTCTCGTCGCGAAAGCGAACCCCGTAGACCCAGCGCGCCTCGCAGTGCGCGCGCAGCCGTCTCAAGAACAAAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGGCCTTGCTTCAAAAATCAGGGACTGCGTGTCTGTAGAGATAAACGAAGATGACGACCTGCCAACTAATGTTTGCAGAAAATGCTGTGACAATGTCAATAACTGGCACATTTTTAAGGATGTTTGTGAAAGGTCACAAAACAAACTACAGAGGCTCATTAAAAATGATGGCAGCCAACTAGAAGAGGTGCAAATTAAAAGTGAACCTTTATCTGATGGGGCTTATGATGATGGAGTGGTTATTGAAGGATCATATCCTGACCTTGAGTGTGCATCAACATCAAGTAAAGTACAAGCAGAAGGTCCTCCTATCTTGGCTTCGCTGGGTCTCACACCGAGGAGTGATAAGGGGATGGAGAGCGAAAATAATGAAGAGGATTTCGAAGAAATGAACGAAGAAGAGATGCATGATTCCGCTCAACAATATCCGAGCATGCCCGCCATGCCTGAGGTGTCCATCACTGTGATGCGGCCCACAGGAGAGACCCTGCACGCTCGCCAAGGGATCCAACAGCTCGCTTCGAAGGAGTGCCTCGTCTGCGGCCGCTCTTACAGATATTCACACAACGCAAGGCGACATGAACTTAATGCTCATGGTTTTGACAGATACACTAACAAAGTAACAACCAAAAAATCTCACAATACACACATGCAGCCAAAACTTAGACCCAATCCGTTCAATCCTAAAGCGAGGCTCATGCCTAATCCTATTAGCCATAAAATGCAATTGATACCTAAAGGGATTAATGCTAAAATTATACAGAATAAATCTCTCGTCCCACCGAAACCGATACCAGTTAAAACACCAAAGGGAACCCAAAATAATTTGCCATATCCGCTTCGTATTAAGGCATTAAAAGACTTACAAATAAAAAAGAAGGAACCACAAATCCTTAAGACGCTGTTAACGACGAAACCTGAAGTTTTGGTATCTGAACCGGAAATTCTTAATTCTGGCCCTGAAAGTCCAGAGACTTTGATATCTGAACCAGAAATAGCTTCGTTTCAGGTAGAGACTATTCTTTCGGAACCGGATACTTATATTCCACAAGATGATGAAGATGTCGATGGTGAAATGCATAATAATCAAGGTCAAAATTACGATACTGTGGACATGGATTCCGAAAATGAGATTGAGATAGCTCGTCAGAAAGAAAACGTTGGCGAAGGTGAAGGGGATGGTGAAGGAGAAGGCGACGGTGACGGCGAAAGTGGTGTTGGTGGTGATCATCTAATTATAAACGAAGGGGAAGACGGTAATGAAATGGACAATGATGATGAAATTAATATGGAGAGAAATCAGAGTGACAATGAAAATGATCATGGCGATAGCCAGGATGGGTTACAAGTCGGCAACGACAACGATGGCGGAGAAGATGAGGAGAATGGACATGAAACCAAAGAAGGTGAAGGACATGATGAGCGAGACGATGAACAGATGGAGTACAATCAGGACGATGATGATGATGACCTGCCGCCTATAGCACCTGTCGTCGAAATCAACGAAGACATGCAAACAAATTCGTACAACAGTGAAGGGAACGATGAAGATCTCGACGAAACTGCCGACCCTAATGACACAGCAGAGGACGTCAAGGAACTCGATCCCGATAAACTATATGTGACAAAGACGCAGAGAGATTTTATACTCAAATATCGCGATATAATCGAACAGATTAATACAAAAAGATGTCTCTGTTGTGACAGGGAACATCCTCGCCGCAAAGCTGTCATACAGCATTTGCAGAAAAATGGACACAAAGTGCCCAAACATACGTGTTACAACTGCGTTGTTACGTTTGGTCATATCGGCGCCTTGCTCAGTCATATGCGCTCCAATACTTGCACAGATCTATGGAAGATCATTTACAATGAAAATGGCATCACCGAAGACTTAGTTCTGGAGGATGAACCTAAAGATACCAAAGTAGCATACAAAGATATATTCAATGCTAGGTCTTATGCTTGCAAATTATGTCCGGCTAAGTTCCAATTGAAGCAGTTTATAATGAAACACGTACTGGACGTGCATGAAGATGGTCAGTCTCGTGTGCAGCTCGTCTGCGTTCATTGCAACTCCAGATTCAAAGATAAAGCATTGTGGAAAAGGCATATACGCAATGGAGAATGCACCGTTTATATTTCTTGCGATTTGTGTTCCGAAAGATTTGGCAACATGCAACATTTCAACGATCACGCATTAGCCGTACACGCCGGGAACTTCGACCAATCTGATAATCAGAACAAATGCGTCGACGGACGACCGACCGATTGTCCCGTCTGCGGGAAGAAGAACAGTAGCTATCCAAATTTAGTTAAACATTTAAAGATTATTCACAACGAGGAGAAACCTCATTACTGCCAGCACTGCGACTCTAAGTTTGAACAAGCTGCTGATCTAAATAAACACATCTATATGGAACATTCTGATAGGACATTAGGCATGCAGAGCAACGAGCCCGACATGTCTCTCGTGAAGGAGGAAGCCGAGGAATACCATTACTCTTGCACAGAATGTAACGCCATATTCGAAACTGTCGACGCTTGGACGGATCATCAGGTGGCCGAACATAATCAAGTCGCTCACCATTGCGATCAATGCGAAAAGAAATTCTTAAGACCGTCAGAACTTGCGGAGCACAAAAATACCCATTTGAGAGTTAAATTTTATCCTTGTAACATCTGCTCCAATTCGTACAGCACGCCACAAAAGCTTTCTGAACACGTTCAGCAAAACCATCCCGGAGCCTCGGGGTACATGCCCGTGGACTATGACTTCTTCTGTGATATCTGCATCAGGTCGTTCAAAAGCCGCCAGGCCTACTCGAACCACATGCGCATACATGCCAAGGTCCCCACCACCAATAGGAAACCTGGCGAACCGAAGGGATTCGCTCCGCAAATTGTTGGAAAGCCGATAAGATCCTTTTCGATGGTACAACCAAATTTCCTTCCTTTCAAACCTAATTGTAACGTTCCGAATGCGCCTTATTCCTGTGATATCTGCGGAAAAGGTTTTATGCACAAAAAAAATATTTGGAAGCATAAGAAAGTGCTGCACGCGGACACCGCTGAGCGAAACGACAGCGAGGAGAACACCATGCAGGCCTCCACCGAAGAGGACGAATACAATTTGGACGAAAATGGCGCCATACTCTCGACGCCGCAATTCAATAGCTTCAATTTTACTAATTTGACAAACAATTTGCAGCAACAAGCACCACAAGCACCCCAGGACTCCACGCCTTATTCCTGCGATTTATGCTTCAAGCGGTTTCCGCTTAGGACGAGTTTATGGAAACACAAGCGCGCCAAGCATGGAATCATCAACGCCAGCGCCAGCGGCAGCTCAGATTCCCCAGTAATGCCCGGAGAAGGCGGCAGATCGAGTTGCACTATTTGTAAAATTACCTTCTCAGACAAAAAATCGTACTATCGTCACAGAAAGAACGTTCACAAGTCGTCGGCGCAAATGTGCAAGATATGCGGGAAACCATTAAATTCAACGTTAGAATTATATGAGCATCTCAAGGCCGCCCACGCCAGGGAGCTGCTCGGATACAACGCGAGTCAGGGTCCCACTAAACAGGAGGTTACACAAGAATTGGAAGTGGAATATGACGGTGATCAGGATTCGGTCGACCCCAGTGCGGAATATCAAGCCCGCTATCCGTGTGACAACTGCGGCAAACAATTCGTTGGGTTGCTCGCGTTGCAGAACCACCAATGCGTAAACCAAATACAGTCATCTACCCAGACATTTGACTGTGAAATATGCCACAAGAGTTACACTTCTATTTCTGCGCTAAAGAGCCACCGCGGTTGGCATTTGCGTTCTCCAGACGGTAAAGCGGCCGCCAATAATTCTGGTTTGTGGATGCCTCAACATAAGGTCACCAGCAAAGTCAGTAAACACGAAGTGGTGGACCCCTCGCAGCTCGCGCGCGTCTCTCACTCGACACCGACGCCCGCCAGCGTCGCCAAGAGGAGACTGCCGCCAGAAGTCGAAGTCACCGTAGTAAATCCCAACAAGAAATTACGTTCCGACGATTCTGTGGAATTGGAACAACAGAACAATTCTTCCACCGGAGCCGACGATAGATATTGCAACATATGCGATAAAGAGTTCACAAAGCGAGCGGCCTACCAGCGGCACATGGACGAAGTACACCAACCGAACTCGGTGTTCTGTCCCGTCTGCGAGAAGAGTTTCACTCGCAAGTCCACGTTGATCGTTCACATGAAGAAACATTACGGCGGCGAGGGCAGTTCCGCCACCACTGATCAGAACGATGACGACAGCCTCGCGTGCGATATTTGCGGGGCGCAGTATGATAACGAGAACGCTCTGAGAGCTCACCGAGCTAACCACGGTGATGATTCGGGAGAGTCCGAAGACGAGGGTAGCAGTGCGCCTCCTCCGGGCGAGTTCACGTGTGGACAGTGCGGAGACGGAGTAGCGACGCCGCGGGATCTCATCGCGCACCGCACCATGCACGCCACACATACCAAATTCTACTGCAATATCTGCAAAGTGTACTTCGCGCGTGCTATTGACCTATCATCACACACGCGTGCGCGCCACGCCGACAACGAGAAGGTGTTCTTCCCATGTGCGATGTGCGACAGATTCTACATGAACAAGAAGAGCTTGCAGCGACACATCGAGATGGCGCACTGA
Protein Sequence: MWNPNATDNRPMEKRVVIGRVRPTWARNLPDAREEDDKSDQEGVMPHSEPPSPTDTWDQQNKQEDKFDVFGKVMLLGDSGVGKTCMLVRFRDGTFLAGNYISTVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTSFDNIRAWLGEIREYAQDDVVIMLLGNKSDSGLERAVRREEGQRLAREYQVAFMETSAKTGLNVEAAFGHVARALVAKANPVDPARLAVRAQPSQEQRLCLSSRGELLPIFPTTSSDDSEPPGLASKIRDCVSVEINEDDDLPTNVCRKCCDNVNNWHIFKDVCERSQNKLQRLIKNDGSQLEEVQIKSEPLSDGAYDDGVVIEGSYPDLECASTSSKVQAEGPPILASLGLTPRSDKGMESENNEEDFEEMNEEEMHDSAQQYPSMPAMPEVSITVMRPTGETLHARQGIQQLASKECLVCGRSYRYSHNARRHELNAHGFDRYTNKVTTKKSHNTHMQPKLRPNPFNPKARLMPNPISHKMQLIPKGINAKIIQNKSLVPPKPIPVKTPKGTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILSEPDTYIPQDDEDVDGEMHNNQGQNYDTVDMDSENEIEIARQKENVGEGEGDGEGEGDGDGESGVGGDHLIINEGEDGNEMDNDDEINMERNQSDNENDHGDSQDGLQVGNDNDGGEDEENGHETKEGEGHDERDDEQMEYNQDDDDDDLPPIAPVVEINEDMQTNSYNSEGNDEDLDETADPNDTAEDVKELDPDKLYVTKTQRDFILKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITEDLVLEDEPKDTKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLVCVHCNSRFKDKALWKRHIRNGECTVYISCDLCSERFGNMQHFNDHALAVHAGNFDQSDNQNKCVDGRPTDCPVCGKKNSSYPNLVKHLKIIHNEEKPHYCQHCDSKFEQAADLNKHIYMEHSDRTLGMQSNEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQNHPGASGYMPVDYDFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIVGKPIRSFSMVQPNFLPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADTAERNDSEENTMQASTEEDEYNLDENGAILSTPQFNSFNFTNLTNNLQQQAPQAPQDSTPYSCDLCFKRFPLRTSLWKHKRAKHGIINASASGSSDSPVMPGEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQMCKICGKPLNSTLELYEHLKAAHARELLGYNASQGPTKQEVTQELEVEYDGDQDSVDPSAEYQARYPCDNCGKQFVGLLALQNHQCVNQIQSSTQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVSHSTPTPASVAKRRLPPEVEVTVVNPNKKLRSDDSVELEQQNNSSTGADDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLIVHMKKHYGGEGSSATTDQNDDDSLACDICGAQYDNENALRAHRANHGDDSGESEDEGSSAPPPGEFTCGQCGDGVATPRDLIAHRTMHATHTKFYCNICKVYFARAIDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: iTF_01140354;
80% Identity: -