Pger034804.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783223.1:6026243-6030642[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.7e-12 1e-08 36.2 1.0 7 52 109 151 104 155 0.91 2 4 10 3.8e+04 -4.2 0.1 58 62 169 173 162 178 0.52 3 4 4e-13 1.5e-09 38.9 10.8 3 70 247 314 245 314 0.96 4 4 2.4 8.9e+03 -2.0 0.1 56 62 331 337 325 340 0.58
Sequence Information
- Coding Sequence
- ATGATCTCACAAGTGTACACAACAACAGAtggaaattataaatttgatggaGTAGAACGTGCTTTAAATAAGGATCCTTTAAAGATGGATGATACTAAATTAACTGAGACTCAAACCTTAATGAAACAGACGTCTTCTATGGAAGCGAATGTATCTAAACCtgagataaatttagaaaaagctTCAAGAAAATACGCAAACACAAAAGCAAGTTTAAGAAAAGGTGTAAACACAGCAAAAAATACATTatcaaatgtaataaattctCCAACAATTCCTGAACATGGAGAACGACAAAATTTCGCAGCTACTTCAAAAATAGGCTACTGTAAAACTTGTCAAGAGAATGTAATACCACAAGTTCGCTATAAAGTTGGACAAATGACGTATCTTCTCTCATCCGTGTTAATACCAGTTTTTGGTTGCTTAATACCATTTTGTATGAATAGGTTTATAGGAGAGACAATGGGGCTGAAACGCCCCACTGTAGTAACACTTGCAGTGCGCTGTATTCTTTGCGGGGAAAGTTTGCGTTACAGAAGAGACGACACCAGCATCTTAATAAAGCATTTAAGACGATGTCATCCTGGAGTTTCAATGACGCTTCTACCGTGCGAACCAACCCCAGAAAAAGAAAAAGCAGACACTAAAACTAGGAGACAGAAATGTCTTGATGCACTATCTTCAAGGTCAAGATGCAAAATGTATAAAACTACagTGGAAACGTGGAGACCAGGATCATCAAAAATAACATGTCCATCTTGTGGAAAAACAGGAGAACCATGTATTCGCAAACAAAGGTCAAAGATTACGCGTTCCCAATTAGCTGCAATGTGTCTAATGGGATGTTGGCCAATATGTTTCCTACCATGCATGCTAGCCAATAATCCAATATCGGACTTACACTGTTGTTTCTGTAGCTATTATCTCGGATCTTACAACTCAAAGCTACAAAAATTAATTCCAAATCAAACTTCGACAACGGAATTGAAAATGAACTGCAAAAAATGCGAATTTGTTGATATCTGCAAGGAAGGCAAACCGATAAAGAATACTTCAGGTGGaaataaaactgcaacaaagaAAGAAAGTCTTCCTGCGAAAGAAGAAGATGCCAATAAAGATGGAAGTAACATGGCTAAAGGAAGCAGCAGATTTACtgcagaaaataataatattataaataactcGAAAGAGAGCagtaaaatatctaaagaaacTGATAAATCCAGCAAAATATCGAAAGAACATAATGATGGTGGAAAAGTATCTGAagaagtaataataaatgaagaaaatgtCAACGCCAGTAACACCGTTCATAAAGATGATAATAATGTCTCCAAAATAGGAAGTAGATCCTCAAAAGGAAGTGTTAGTGTTACTAAAGAAAGTAATACCAATTGA
- Protein Sequence
- MISQVYTTTDGNYKFDGVERALNKDPLKMDDTKLTETQTLMKQTSSMEANVSKPEINLEKASRKYANTKASLRKGVNTAKNTLSNVINSPTIPEHGERQNFAATSKIGYCKTCQENVIPQVRYKVGQMTYLLSSVLIPVFGCLIPFCMNRFIGETMGLKRPTVVTLAVRCILCGESLRYRRDDTSILIKHLRRCHPGVSMTLLPCEPTPEKEKADTKTRRQKCLDALSSRSRCKMYKTTVETWRPGSSKITCPSCGKTGEPCIRKQRSKITRSQLAAMCLMGCWPICFLPCMLANNPISDLHCCFCSYYLGSYNSKLQKLIPNQTSTTELKMNCKKCEFVDICKEGKPIKNTSGGNKTATKKESLPAKEEDANKDGSNMAKGSSRFTAENNNIINNSKESSKISKETDKSSKISKEHNDGGKVSEEVIINEENVNASNTVHKDDNNVSKIGSRSSKGSVSVTKESNTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01137086;
- 90% Identity
- iTF_01137086;
- 80% Identity
- iTF_01137086;