Pger021962.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783211.1:8478089-8479012[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.8 1.3e+04 -2.6 0.1 36 45 122 131 112 141 0.58 2 5 0.73 5.5e+03 -1.4 0.0 27 46 141 160 136 166 0.79 3 5 0.0033 25 6.1 0.0 26 49 168 191 162 194 0.85 4 5 3e-05 0.22 12.7 0.3 21 47 191 217 187 224 0.89 5 5 7.2e-05 0.54 11.5 0.0 13 52 240 278 234 280 0.84
Sequence Information
- Coding Sequence
- ATGGAAGAGATGGTAAATGTTATATCCGAACCTGACATAAATGTCATTGTTAATAGAATGGAAACAGAAGAAGTTCTTGCTACAATAACAAAAGAAGTTTGTCATAATTCAGAAACACATAAGCACATGTCAAATGATCAAGAATTGTACGTTAAAAGTGAAATGAAAGAAGAAACGGATACCTGTGTATCACTTTTTAGCAACATTACCGGTGAGAAAATTAATCTACATGGCAGCGAATTTGAAATACAAGTAGAAATATTTCCAGAAGAAGTTTTTCATGATAAAGAAAAGTTATCCGCAAAAGTGAATGATGGTGAAACGGATATGTACCCATGTACATATTGTGATAaaagttttaacaaaaaaaGTTCGTTAAATAGACACGTAAATCGTCATATTCTGGGAAGAGCCTTTAAGTGTCATATGTGTGAAAAAGGCTTTTATAATGCGGGACATTTACGGCAGCATTTAACTATACATTCTGGAATTAAAAAGCATTCTTGCTCATATTGTGGAAAGATGTTTAATCAGTCAAGCAATTTGCAACAACATATTAGAATGCATACTGGTGAAAAACCTTTCTGTTGTAATCAATGTGGCCAAACATTTCGTCAATCTAGTAATTTAACTCAACATCTTTTATTGCATTCTGGAGAACATCCTTTTAAATGTAGTGAATGTGGTAAAGGTTTTAATCAAGCTGGAAGTTTATCAGAACATTTAAGATCACATGCTCAAATTAAACCTTTTAATTGTGGACTATGTGACAAGTGgtttggaaaatctggcaatcTTAAACGACATCTTAGAATACATGCGGGACTCAAACCTCATATTTGTGAATACTGCAATAAAGCATTTGAGAATATGACACATCTACAAAAACACAAAGCAACGCATGAGAAGAAAAATGATGTCTAA
- Protein Sequence
- MEEMVNVISEPDINVIVNRMETEEVLATITKEVCHNSETHKHMSNDQELYVKSEMKEETDTCVSLFSNITGEKINLHGSEFEIQVEIFPEEVFHDKEKLSAKVNDGETDMYPCTYCDKSFNKKSSLNRHVNRHILGRAFKCHMCEKGFYNAGHLRQHLTIHSGIKKHSCSYCGKMFNQSSNLQQHIRMHTGEKPFCCNQCGQTFRQSSNLTQHLLLHSGEHPFKCSECGKGFNQAGSLSEHLRSHAQIKPFNCGLCDKWFGKSGNLKRHLRIHAGLKPHICEYCNKAFENMTHLQKHKATHEKKNDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01137223;
- 90% Identity
- iTF_01137223;
- 80% Identity
- iTF_01137223;