Pger009700.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783205.1:22064104-22067250[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.49 3.7e+03 -0.8 0.1 25 43 124 142 116 143 0.74 2 7 0.015 1.1e+02 4.1 0.1 16 44 143 171 136 175 0.77 3 7 0.00023 1.7 9.8 0.1 21 43 176 198 171 203 0.90 4 7 0.0021 16 6.8 0.0 21 44 204 227 200 232 0.88 5 7 0.0029 22 6.3 0.0 21 47 232 258 228 263 0.84 6 7 0.00035 2.6 9.3 0.6 23 45 262 283 258 289 0.86 7 7 0.066 5e+02 2.0 0.6 23 44 290 311 285 314 0.88
Sequence Information
- Coding Sequence
- ATGGATGAAGATGACTTTTATGGGGATAATTCATCATCGAAATACATTATTTCGGTAATGGGTATTAATACTGATGGTACTGTAGTTATAAACAGTCATAGAAATCACACAGAAGTTACTGACATAAATATTGAATCAGATGCAGTTCTTGTTCTTCCACTTGAAGCTGATGAAGATGCCTCAATCGACAATCCAGAAAACATAtATGAGGAAGAAGTTATTGGCACATACGATACATTTCCCTTAGCAGAACATGATCAACATCCTTTAGAACTAGTTTCTATAGATTATATTAATGAACTTCCTAGAACAACTAAAATACGGAGAATTAGAACTGTGGATACATCTGATATATCTGATGAACTCATGTATACTTGTGATATATgtttaaaaacttttacaaatGACAATTCTTTAACAAAACATAGAGCTGGTCATGAAAATCCACAACGATATCAATGTGGAATATGTGAGAAGAATTTTTCACAACAAAGTAATTTATGGAAACATATTCGAGCACATACAGGGGAGAGGCCTTTCACTTGTAACATTTGTAATAAAGCATTCACACAACTAGCTAATTTGCAGAAGcataattatgtacatacagGTGAAAAGCCGTACCAATGTCCTGTTTGTGATAAAGGATTTTCCCAACAAGCGAATATGATGAAACACCAAATATTGCATACAGgTGAGAGACCATTCGTTTGTGAAGTTTGTCAAAAAGGGTTTACACAAAAATCTAATTTGCATAAACATGAGCTATTACACAGAGGTATCAAGCCCTACGCATGCCAGGTGTGCTTCAAGGCTTTCGCCCAACAATCAAACTTACGGAAGCATGAATGCCAGCATATAAATCATAGGCCCCACAAATGCCCGAACTGCAATAAAGCTTACATTCAAAAAATAAGTCTTTCCCGACATATGGCTAGATGCAATGGAAGAGGTGGGCCCCATGCTACATTGTCTGAAGATGTAGGTCATAATCTTTTGGCCAGCGATGTCAATCCAGAGGAATTTCACATGGAGGAATTCGTAGATGAAGATCTAACGCAGATCATTGACTTGAATAATGTAAAACAAGAATATATTGAACCATCAGAAACTGACTGTCATAGTTCGATAGAAagccaatatttttattag
- Protein Sequence
- MDEDDFYGDNSSSKYIISVMGINTDGTVVINSHRNHTEVTDINIESDAVLVLPLEADEDASIDNPENIYEEEVIGTYDTFPLAEHDQHPLELVSIDYINELPRTTKIRRIRTVDTSDISDELMYTCDICLKTFTNDNSLTKHRAGHENPQRYQCGICEKNFSQQSNLWKHIRAHTGERPFTCNICNKAFTQLANLQKHNYVHTGEKPYQCPVCDKGFSQQANMMKHQILHTGERPFVCEVCQKGFTQKSNLHKHELLHRGIKPYACQVCFKAFAQQSNLRKHECQHINHRPHKCPNCNKAYIQKISLSRHMARCNGRGGPHATLSEDVGHNLLASDVNPEEFHMEEFVDEDLTQIIDLNNVKQEYIEPSETDCHSSIESQYFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01137207;
- 90% Identity
- iTF_01137207;
- 80% Identity
- iTF_01137207;