Pger019218.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783210.1:1438942-1440210[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0043 32 5.8 0.0 20 44 223 247 217 255 0.85 2 6 0.11 8.1e+02 1.3 0.0 21 43 252 274 247 280 0.82 3 6 0.033 2.5e+02 2.9 0.1 21 43 280 302 272 306 0.83 4 6 0.0014 11 7.3 0.0 21 44 308 331 302 335 0.87 5 6 0.00074 5.6 8.2 0.0 19 47 362 390 354 395 0.83 6 6 0.014 1e+02 4.2 0.0 21 43 392 414 387 421 0.89
Sequence Information
- Coding Sequence
- ATGGAAAATACGGATATCAACATGGTAGCTGTTTCTCCAATATGTCCTGTTAATGAAACTGGCAACGTTAGAATAGATACTGAACGCAACAATGTTGTTTACATTGATGAAATTCATGTTATTTCAGAAATCAAAGAGGAAATTGAGGAAAATATAGTACCTGTAAGCTCACAAGAAGTGCCATTTAGTAACTATATAACATATGAAAATGTGAAGTCCTTAAAATGTGCGTATTGTGAAACGTGCTTGACATACTGGGAAGATGTGGCAGCCTTGAAAGATCACCTTAAAACTAGCCCTGAATGCGAACAGATTgttgataatataaatatacctaGCAATAAGTCACAAGATAAAAGCTGCGAAATTTTTGTTCATAAAAAGTGTGGCGGAACTTTTAGTATAGATCACACCAACCATGTTAAGTCCAATGGAAATTGTACATGCGTTGAGTCTAATGTTAACTTAGTTGTTAATCAGAATATAAATACATCGGATATTAAATCCAATGTACCAGAAAGATTTGTTTCCAAGAAGCTATTTACTGCAAAGAGTAACCTAAAAAATCGTATTCGTGATAATAAGAGGAAAAAGTTATTTGCATGTGATATCTGTTGCCAGCGTTTTACTAATAATAGTGCTCTAACTATCCACAAAAGGAAGCATACAGGAGAGAAACCTTTTTTGTGTGACATTTGTCAGCAATCTTTTGCCGAAAAGAGTAATCTTACTAGACATAAACGGAAGCATACTGGAGAGAAGCCATTTTCATGTGATGTTTGTAACCAGTCTTTCTCTCAAAAAGTTAGTTTACACACTCATAAACGAACGCACACTGGAGAAAAACCTTTTGTTTGTGATATTTGCAGCCAGGCTTTTGCTAGAGAAGATAATCTTAATACTCATAAGAGAACGCATACAGGGGAAAAACCTTTTTTCTGTGACCTGTGCTATCAATCTTTTACTCAAAATGCGAGTTTAAGAATTCATAAACGAATGCATACAGGAGAATATTATGTTTCTTGTGATATTTGTGATCAGAAATTTTATGATAAGGGTCACTTAACTAGGCATAAACGGAAGCATACAGGAGAAAAACCCTTTTTTTGTGACATTTGTCATCAATCTTTTTCTGAAAAAAGCAACCTTAATAGACATAAAAGAATGCATACGGGAGAGAAAccttttttttgtgacatttgtaacCAGTCTTTTAGTCAGAAGGTCAATTTAAATAGCCATAAACGAACACATaccgtaaataaataa
- Protein Sequence
- MENTDINMVAVSPICPVNETGNVRIDTERNNVVYIDEIHVISEIKEEIEENIVPVSSQEVPFSNYITYENVKSLKCAYCETCLTYWEDVAALKDHLKTSPECEQIVDNINIPSNKSQDKSCEIFVHKKCGGTFSIDHTNHVKSNGNCTCVESNVNLVVNQNINTSDIKSNVPERFVSKKLFTAKSNLKNRIRDNKRKKLFACDICCQRFTNNSALTIHKRKHTGEKPFLCDICQQSFAEKSNLTRHKRKHTGEKPFSCDVCNQSFSQKVSLHTHKRTHTGEKPFVCDICSQAFAREDNLNTHKRTHTGEKPFFCDLCYQSFTQNASLRIHKRMHTGEYYVSCDICDQKFYDKGHLTRHKRKHTGEKPFFCDICHQSFSEKSNLNRHKRMHTGEKPFFCDICNQSFSQKVNLNSHKRTHTVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01137268;
- 90% Identity
- iTF_01137268;
- 80% Identity
- iTF_01137268;