Pger027248.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783215.1:14738496-14740276[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0049 0.32 12.6 2.5 1 23 171 192 171 192 0.97 2 12 0.038 2.5 9.8 0.5 2 23 195 216 195 216 0.96 3 12 0.42 27 6.5 0.1 2 14 220 232 219 233 0.88 4 12 0.76 49 5.7 4.9 1 23 257 278 257 278 0.95 5 12 0.86 55 5.5 3.0 2 23 281 302 281 302 0.89 6 12 0.0041 0.27 12.8 1.7 2 23 306 327 306 327 0.94 7 12 4.6e-06 0.0003 22.1 1.5 3 23 334 354 332 354 0.97 8 12 1.3e-05 0.00084 20.7 1.6 1 23 360 382 360 383 0.95 9 12 6.1e-05 0.004 18.6 2.8 1 23 389 411 389 411 0.97 10 12 3.5e-05 0.0022 19.3 4.5 1 23 417 439 417 439 0.98 11 12 3.2e-05 0.002 19.5 2.1 3 23 447 467 446 467 0.98 12 12 2.4e-05 0.0016 19.8 1.4 1 23 473 495 473 495 0.98
Sequence Information
- Coding Sequence
- ATGGATACCGATGTGGAGACAATTAATATTGAAAAGATAATTTCGGACTGGGACAAATTATGTCGAATTTGTTTAGCAGATCAAGAGCTTTTATTTCCTGTTTTTAGCATTATTGAATTAGATGAACAGTACAATATGAGTTTTTGTGAAATGCTAAATACCTGCTCGACCCTTAAAGTGTCGTCTAATGATAATTTTCCACAATTAATTTGCTCATTATGCATTACACATATGCGTCACGCActagaattcagaataaaaTGCCAATCTTCCCAAATGATATTAACAGAAATACTACATAAAAAGAATGatTTAAATACAACCGTAAAATGTGAAGTAATTGAAGTAAAAGAACCCTCTGCAGAAACCAGTGCTGAGTATTTGTACTTAGTTGAAGCAAAATTGGTTACAGAAGTCGATGAAAAAGAAAGCCCAAAGAAACAGTCACATACTATATTACCtacaaagaaagaaaatatagaATCAAATAGTATTATCTTAAAGAAAGTGCATAGCTGTCCAATATGCCAAGAATCCTACAATTATAGAGAACTACAATCACACAAGAAAACACATCCTAATACATGCTGGAGatgtaacattaattttaaaagagtAGTAGAATACAAAGAGCATTTAAACGAACATAAAGAAAAAGTTTGCTCCGAATGTGGaaaggttttaaaaaacaaagagtTATGTTGTCCACagaaaataaaaccagtaagaaataaattaaattctgtaTTTTCAAGGATTAAAAAAGTGCACACCTGTCCAATATGCCACGTATCTTGCAAATACAAAGCACTAGGAGCCCATAAGAGAACCCATCTCAATACATGTTGGAAATGTAACACTAGTTTTAAAAGCGCGAAAGAACATGAAGACCATTTCAAAGAGCATGAGGAAAATGTTTGTTCTGAATGTGGAAAAGTTTTTGCAAACAAAAGATTGTGTAAACAACACAAAATTATTCACGCTAAGGACAAATGTTTGTGTACAATTTGtggaaaaatatttgttactcCATCTGCTTTGATCGTTCATCATCGAAAGCATACTCAGGAGCAGAGATACGATTGTAATTATTGCGGCAAAAAGTTTATGGATTGGTCAAGCCGAATAATTCATATTCGAAATCATCATACTTTGGAAAAACCATTTGCGTGTGATATTTGTAACAGTTGTTTTGCACATAAACGTCAGTTAGTACGCCATATGCTAATCCATTCTAATGAAAAGCCTTTCACGTGTACGATGTGTGATTCGAGGTTTAAACGAAAGTCAACATTAACTACTCACATGTTTAAGCACACCGGAGAAAAACGAGTGTTTTGCACAGTTTGCAACAAAGGGTTTGTcaaaaatcataatttaaaagtacatatgGTGACGCACACTGGAGAAAAGAACTTTGTGTGTTCTGTGTGTAGGAAAGGGTTTTCACAAGCACATGTGCTGCGCACTCACATGAAAATACATGTGGAAAGTGCAtcaacaaagaaaaaacaactTGCTGTTACTTCGTAA
- Protein Sequence
- MDTDVETINIEKIISDWDKLCRICLADQELLFPVFSIIELDEQYNMSFCEMLNTCSTLKVSSNDNFPQLICSLCITHMRHALEFRIKCQSSQMILTEILHKKNDLNTTVKCEVIEVKEPSAETSAEYLYLVEAKLVTEVDEKESPKKQSHTILPTKKENIESNSIILKKVHSCPICQESYNYRELQSHKKTHPNTCWRCNINFKRVVEYKEHLNEHKEKVCSECGKVLKNKELCCPQKIKPVRNKLNSVFSRIKKVHTCPICHVSCKYKALGAHKRTHLNTCWKCNTSFKSAKEHEDHFKEHEENVCSECGKVFANKRLCKQHKIIHAKDKCLCTICGKIFVTPSALIVHHRKHTQEQRYDCNYCGKKFMDWSSRIIHIRNHHTLEKPFACDICNSCFAHKRQLVRHMLIHSNEKPFTCTMCDSRFKRKSTLTTHMFKHTGEKRVFCTVCNKGFVKNHNLKVHMVTHTGEKNFVCSVCRKGFSQAHVLRTHMKIHVESASTKKKQLAVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01137248;
- 90% Identity
- -
- 80% Identity
- -