Pger027249.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783215.1:14741419-14742842[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.04 2.6 9.7 3.9 1 23 79 100 79 100 0.97 2 12 0.031 2 10.0 0.4 2 23 103 124 103 124 0.96 3 12 0.34 22 6.8 0.1 2 14 128 140 127 141 0.88 4 12 1.1 72 5.2 3.4 1 23 165 186 165 186 0.94 5 12 0.096 6.2 8.5 0.8 2 23 189 210 189 210 0.94 6 12 0.0012 0.079 14.5 1.8 2 23 214 235 214 235 0.94 7 12 2.4e-06 0.00016 23.0 3.8 3 23 242 262 240 262 0.97 8 12 4.7e-06 0.0003 22.1 2.9 1 23 269 291 269 292 0.96 9 12 0.00097 0.063 14.8 0.5 1 23 298 320 298 320 0.92 10 12 2.1e-05 0.0014 20.0 1.5 1 23 326 348 326 348 0.97 11 12 7.2e-06 0.00046 21.5 1.9 3 23 356 376 355 376 0.98 12 12 2.8e-06 0.00018 22.8 1.5 1 23 382 404 382 404 0.98
Sequence Information
- Coding Sequence
- ATGATTTTAACAGAATTACTTCATAAAAAGAATGATTTAAATACAACCGTAAAATGTGAAGTAATTGAAGTAAAAGAACCCTCTGCAGAAACCAATGCTGACTATCTGTACTTAGCTGAAGCAAAATTGGTCACAGGAGTCGATGAAAATGAAAGCCCAAAGAAAAAATCACATCCTATATTACCtacaaagaaagaaaatatagaATCAAATAGTATTATCTTAAAGAAAGTGCATAGCTGTCCAATATGTGAAGAATCCTGCAGTTATAGAGAACTACAATCACACAAAAAAACACATCCTAATACATGCTGGAGatgtaacattaattttaaaagtatagaAGAATATAAAGAGCATTTAAACGAACATAAAGAAAAAGTTTGCTCCGAATGTGGaaaggttttaaaaaacaaagagtTATGTTGTTCACagaaaataaaaccagtaagaaataaattaaattctgtaTTATCAAGGATTAAAAAAGTGCATATCTGTCCAATATGCCATGTATCTTGCAAATACATAGAACTAGGAGCCCATAAAAGAACCCATCTCAATACATGTTGGAACTGTAACATAAGTTTTAAAAACGCGGAAGAACACATAGAACATTTAAAAGAACATGACGAAAATGTGTGCTCTGAATGTGGGAAAGTTTTTAGAAACAAAGGATTATGTAAACAACACAAAATTATTCACGCCAAGGACAAATGTTTGTGTACAATTTGCGGAAAGAAATTTAGCACTCCTACTAATTTGGCTGCTCATCATCGAAAGCATACTGAAGAGCCTAAAAGATATGAGTGTAGTTATTGTGGTAAAAAGTTTGCAGATTGGTCTACGCGCAGATATCACATTAGGAATCATCACACGTTAGAAAAACCTTTTGCTTGTGATATTTGCAATAGTCGTTTTGCAAATAGGAGTCATTTGGTGGGCCACATGCCAACCCATTCCATTGAAAGACCATTTGCTTGTACAATGTGTGAAGCTAAGTTTAAACAACGGTCAGCATTAAATAAACACATGTTTAAGCACACGGGAGAAAAACGAGTGTTTTGCACAGTGTGCAATAAAGGCTTCgttacaaatcataatttaaaaGTACACATGGTTACACACACTGGAGAAAAGAACTTTGTTTGTTCTGTGTGCAACAAAGGGTTTTCCCAAGCACATGTCCTGCGGACTCATATGAACACACATTCAGACAATGCCTGCACTAGGAAGACGAACATTCATGGGACTCCGTGA
- Protein Sequence
- MILTELLHKKNDLNTTVKCEVIEVKEPSAETNADYLYLAEAKLVTGVDENESPKKKSHPILPTKKENIESNSIILKKVHSCPICEESCSYRELQSHKKTHPNTCWRCNINFKSIEEYKEHLNEHKEKVCSECGKVLKNKELCCSQKIKPVRNKLNSVLSRIKKVHICPICHVSCKYIELGAHKRTHLNTCWNCNISFKNAEEHIEHLKEHDENVCSECGKVFRNKGLCKQHKIIHAKDKCLCTICGKKFSTPTNLAAHHRKHTEEPKRYECSYCGKKFADWSTRRYHIRNHHTLEKPFACDICNSRFANRSHLVGHMPTHSIERPFACTMCEAKFKQRSALNKHMFKHTGEKRVFCTVCNKGFVTNHNLKVHMVTHTGEKNFVCSVCNKGFSQAHVLRTHMNTHSDNACTRKTNIHGTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01137269;
- 90% Identity
- -
- 80% Identity
- -