Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 9.2e-05 0.16 13.1 1.5 11 41 95 122 91 130 0.84

2 7 0.068 1.2e+02 3.9 0.1 18 32 130 146 125 151 0.77

3 7 7.9e-05 0.13 13.3 1.5 14 41 154 178 142 180 0.80

4 7 1.3 2.2e+03 -0.2 0.4 19 33 187 203 185 208 0.71

5 7 0.011 20 6.4 2.8 18 38 214 231 203 239 0.76

6 7 0.0009 1.5 9.9 0.5 19 40 243 261 236 264 0.84

7 7 0.00084 1.4 10.0 1.3 14 41 266 290 262 291 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	9.2e-05	0.16	13.1	1.5	11	41	95	122	91	130	0.84
2	7	0.068	1.2e+02	3.9	0.1	18	32	130	146	125	151	0.77
3	7	7.9e-05	0.13	13.3	1.5	14	41	154	178	142	180	0.80
4	7	1.3	2.2e+03	-0.2	0.4	19	33	187	203	185	208	0.71
5	7	0.011	20	6.4	2.8	18	38	214	231	203	239	0.76
6	7	0.0009	1.5	9.9	0.5	19	40	243	261	236	264	0.84
7	7	0.00084	1.4	10.0	1.3	14	41	266	290	262	291	0.89

Coding Sequence: ATGTCTAATATGAATAATACAGAAACATTTATAGCAGAACAATATGTCACAGAACCAGATCTTACAACAGTCTGGAGCGTAACCAGTTTCAATAAAATCGATgctatagaaataaatttaactgataattattataacaatgaTCTACTGATTCTGGAGCTACAAGATGAGAATAATCAAGAATCCCTTAATTTCATCCAACGCATGCACCTTAAAACGAATGATGCAGTAACGACTAAAGAACAATTAACAGACAGTAAAATGCAGCTGAAGAACAATACTTCAGAAAAAGAAAAGCGTCTTACATGTTTACAGTGTGCAAGAGTATTTACGAATGTAAGCAACTTAAAACGTCATATCATAACTCATTCTGCAGAACGTCCTCATAAGTGTCCGATATGtgaaaaaacatttaaacaacCAGCTGATTTAAAAACTCATGCACTACTCCATTCTGGAGATAAACCACATGAATGTTCGCATTGTGGAAAACGTTTTGCTCACCCTAGTAATCTAAAAAGACATTTAGTGACTCATAGTGGAGAACGCCCTTACAACTGTACAGAATGTTACAAAACCTATGCAAGATTGGCTCACCTAGagacacatttattaactcATACTGGAGAGCGTCCCTATAAATGCAATATGTGTGAGAAAACTTTTACACAGCAAACACATCTTAAAACTCATATTATGATCCACCTCGGGCAGAAGCCCTATAATTGTGAAGACTGCGATAAAACCTTCACGAACAGCAGTAATTTAAGACGTCATATTCTGAGACATAACctaaatcaaaaatttaaatgcaaGCATTGTTTGAAGGGTTTTACTCAGTCATCAGATCTTAAAGCACATCTAGAAACGCATGATCCTGTCACACCAAACTCATTACGTAATATTCCAAGAATTCTTAAAAGGCCTAATTTATAA
Protein Sequence: MSNMNNTETFIAEQYVTEPDLTTVWSVTSFNKIDAIEINLTDNYYNNDLLILELQDENNQESLNFIQRMHLKTNDAVTTKEQLTDSKMQLKNNTSEKEKRLTCLQCARVFTNVSNLKRHIITHSAERPHKCPICEKTFKQPADLKTHALLHSGDKPHECSHCGKRFAHPSNLKRHLVTHSGERPYNCTECYKTYARLAHLETHLLTHTGERPYKCNMCEKTFTQQTHLKTHIMIHLGQKPYNCEDCDKTFTNSSNLRRHILRHNLNQKFKCKHCLKGFTQSSDLKAHLETHDPVTPNSLRNIPRILKRPNL

Sequence clustering based on sequence similarity using MMseqs2