Pger032428.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963678705.1
- Location
- OY783220.1:10418453-10421806[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.073 2.7e+03 -1.6 3.0 33 101 16 83 10 124 0.67 2 3 1.6e-103 6.2e-99 332.1 26.4 1 299 150 443 150 444 0.92 3 3 0.031 1.2e+03 -0.4 3.1 124 171 446 493 443 504 0.63
Sequence Information
- Coding Sequence
- atggcgAACAGTTGTGATATTATAACAGACTTGGATTGTAATGAAAATAGTGCAAAAAAATCAAACAGTAATAAAACAGTGCAAGAAAATATTGAATCAATAATGGAATCATCAAAATCAATTAACAAAACATTAAAGCAAAGTTCTTCAGAACAATCAGACTCTGATATATATGAATTTAGTGATGATGATTTTGAAAAAGGTGAAAATGATTCATCAAAGGGTCCGGTAAATGAAGCGTTTAATAAAAGTAGATTAGGAGATGTGGAACATGAACAGGGTCCTAGaatgaaaaagaaatgtttgcaagattttgaaataaaacaagcTATAGATAAAATGGATGATATCGATGATGATGATTTGGAAGATTTAGATGACGATACAAGGAATACTAACGATGATGATGACACTATTGTTGATTTCCTAGTCAAAACAGATGATGAAGCAGAAGCACGACTAGCAGCGAGACGACAAGCTCGCGTTGAAGCCAAGGAGATTCGAATGCGAGAACTGGAGCGCCTCCAAAAGGAACATGAAGAAAATGCAGACCGCGTATACGACATGTACACAGGAATTGCAGCTGATCCGGTAAGCAGAAGTGCGAGGGTTATAGCAGCAGTGGGTACCGGAGCAACAAGGGCTCATTCGAGCTCGCTGTCTTCCCGAAGAAGCTCAGAAGATTCATTAGAAGATGGGTTGAGTTTAAGGGATGTTCGACACGAGTTAAGGGATATAGAAGAAAGGTTTCGAAAAGCAATGATAGCTAATGCTCAATTAGATAATGATAAAACAGCGACTAGTTATCAATTACAACTATTAAAAGATCGGTTAGAAGACCTAGAGGAAACTCATGCACAACtacaaAGAGAACATAAAGACAAATGCCGGGAGCATGACCAAATGAAGCGAGCTCTTGCACGACTAACTGAAGATCTAGATATTTGCAAAGCACAACTAAATGAAAGGGATATGTTAATTACAGACGCTGGATTAGTAATAGTTGGTGgggaaataaatgaatatgatGAAAATGGGGAATGTTCGAAACGGACGTTAGTCAGTGTTGAGGGTGCTAAAATGCTTGAAGGAGCAGGAGAAGGATCACTAGATGTTCGGCTGCGAAGTTTTGCGGAAGAACGAAAAAGTTTACAACAAGAAGTTTATCGATTACAACAAGAATTATCAGATGTAAGAAGTCAAGGGAAACGAGGCACATCAAATGGACCCCTTAGTGATGCTGATGATTTAGAAGATGTTCAAAgAGAAGCAAATAAACAATTATCAGAAGCCCGGTTTCGTCTTCAAAAAGCAGAACAAGAAGCAAGTAGTTTGCAGGCGGTAGTTGCACGATTAGAATCACAAGTTGTTAGATATAAAAGTTCAGCGGAAGCATCCGAAAAAGCAGAAGAAGCTCTTAAAGTAGATAAAAGGAAATTACAACGAGAGTCAAGGGAGGCATTGGCCCGGGTAGAAGAATTAGAAACAGCAAATAATCATCTATTAAAGAGGTtggataaactaaaaaatgcTAAAAGTGCCTTGCTCAAAGAACTGTGA
- Protein Sequence
- MANSCDIITDLDCNENSAKKSNSNKTVQENIESIMESSKSINKTLKQSSSEQSDSDIYEFSDDDFEKGENDSSKGPVNEAFNKSRLGDVEHEQGPRMKKKCLQDFEIKQAIDKMDDIDDDDLEDLDDDTRNTNDDDDTIVDFLVKTDDEAEARLAARRQARVEAKEIRMRELERLQKEHEENADRVYDMYTGIAADPVSRSARVIAAVGTGATRAHSSSLSSRRSSEDSLEDGLSLRDVRHELRDIEERFRKAMIANAQLDNDKTATSYQLQLLKDRLEDLEETHAQLQREHKDKCREHDQMKRALARLTEDLDICKAQLNERDMLITDAGLVIVGGEINEYDENGECSKRTLVSVEGAKMLEGAGEGSLDVRLRSFAEERKSLQQEVYRLQQELSDVRSQGKRGTSNGPLSDADDLEDVQREANKQLSEARFRLQKAEQEASSLQAVVARLESQVVRYKSSAEASEKAEEALKVDKRKLQRESREALARVEELETANNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -