Basic Information

Insect: Pandemis heparana
Gene Symbol: -
Assembly: GCA_963854515.1
Location: OY978021.1:3229650-3240745[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00023 0.015 16.4 3.0 1 23 366 388 366 388 0.98

2 11 1.4 90 4.5 0.3 2 23 396 418 396 418 0.92

3 11 0.043 2.8 9.3 3.2 1 23 422 444 422 444 0.96

4 11 0.033 2.2 9.6 0.1 1 23 449 472 449 472 0.98

5 11 0.0096 0.63 11.3 0.1 1 23 476 499 476 499 0.95

6 11 0.0064 0.42 11.9 0.4 1 22 511 532 511 536 0.93

7 11 0.016 1.1 10.6 0.1 2 23 555 577 555 577 0.91

8 11 0.0015 0.1 13.8 1.7 2 23 632 653 632 653 0.97

9 11 0.0011 0.071 14.3 0.1 2 23 659 680 658 680 0.91

10 11 1.5e-05 0.001 20.1 3.0 1 23 686 708 686 708 0.98

11 11 6.3e-05 0.0041 18.2 1.7 1 23 714 737 714 737 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00023	0.015	16.4	3.0	1	23	366	388	366	388	0.98
2	11	1.4	90	4.5	0.3	2	23	396	418	396	418	0.92
3	11	0.043	2.8	9.3	3.2	1	23	422	444	422	444	0.96
4	11	0.033	2.2	9.6	0.1	1	23	449	472	449	472	0.98
5	11	0.0096	0.63	11.3	0.1	1	23	476	499	476	499	0.95
6	11	0.0064	0.42	11.9	0.4	1	22	511	532	511	536	0.93
7	11	0.016	1.1	10.6	0.1	2	23	555	577	555	577	0.91
8	11	0.0015	0.1	13.8	1.7	2	23	632	653	632	653	0.97
9	11	0.0011	0.071	14.3	0.1	2	23	659	680	658	680	0.91
10	11	1.5e-05	0.001	20.1	3.0	1	23	686	708	686	708	0.98
11	11	6.3e-05	0.0041	18.2	1.7	1	23	714	737	714	737	0.98

Sequence Information

Coding Sequence: ATGGTGGCGTATTGCTGTGTAAAAGGTTGCACTAACAACAGCAGCAACAAAAAGAAAGATCCCAACGACATCACGTCCTTTCATGCTTTTCCAACAAACATTGAATTGAAGCAAAAATGGGTCCGAGCTATCGGCAGACCAAACTGGGGGCCTCCAAGCTACGCTCGCGTGTGCAGCGCGCACTTTAGCTACGAACAGATCAACCACGACGGACGGAGGATTCGGATCAAAGATGATGCTGTTCCAGTTAAAGATTTACCCGCCAACTCTAACTTTGAGGCATCTCATGTAGAAGTTTGTCGGTTCTGCCTTGCTGCTGATCTGAAGATGCACAGCCTCCAAAGTGGAGTGCACAGGGTCTACATGGATTCACTTGTCGGATATAATGAGAATTATACCATCGAAGGCCTTCCACAATTTGTATGTTATGAATGTGCAGCGCACCTACGGAAATGCTATAACCTAATAGAGAAGAGTATGATAGCGCAGGCAACTTTACTTGATATATTTGCTCATAATGGGAAGATAACAAAAGATCTCGTTAGATCAAAAAATAGAACCGAACTTAATTTAATATCGCCATTGGGCGTTTATGAAGTAGACACAAATGAAGTTGAATGCAAAGAGGATTCGGAATTTGTAAATATTGATATTACTCAAAATGAAGATGAAACTAGTAGTAAAACTGCAGAAGATTTTATAAACACACCCAAAATAGAAGTAACCAATTTCACACAATCTGAAGAAATAGATGATATTGATGACTATGATGTAATGGATACTAATTTTCATGAAGAGAATGATGAAAGAGATGAGAAATTGAATGACAAATTTAAATGTGCAAATCATGATGTtaatattgaaaattttaatgtaaatgaTGAAgtaaaaacgaaattaactagCATTAATGATGAGGAAGAAgaaattagaatttataaaaaaacaagaaagaGGACGAAATCAAGTAAACGGGGACTGACGCCAGATGAAGAGGAAATGGAGAAATATTTTACCATCGTGAAGTTAACATTAGAGCAACAAATAGAAGAGTGGAACAGAAGCAAAGGAAACACGGAATCCAGCAATGAAACATTTAAATGCCAGATCTGTTCCAAAGTGTTTGCGCATCGCAATTCTTATCAAATGCACGTGTTAAGGCATGAACCAAGTCGAGGCAGAGCCGAGTGCGCAGTGTGCAAGCTTCGGTTCAAAAACGATGTGCTGGCCAGGTCGCACGCTAACCGGACGCACGGCAAGAAGTTCCACTGCAAGACCTGCCCCAAGGCTTTTAGTAATGTCGGCGTGGCAAAGAAGCACCACAAGTGGCACGTGGGTCACGTGTACTCGTGCCGTTGGTGCCCGTTCGCGAGCGCGCACGCGTCGGCGCTGGGCGCGCACGCGCGCACGCAGCACGCCACCGCGCACGTGTGCGTCGTGTGCGGACACGCGTTTGTCAGCGCAAGGGGGCTCGCGCTGCACGCTGCTACTGTGCACCAGGAGGAGCCTGATCGAGAAGAAAGTCTGCAGTATCGGTGTGAGGAGTGCGATCTCAACTTCAAGACGGAGGGTGCGCGACGCGTCCACTTGCTGACCTCGAAGCaacataagaaaaataaaagtttatgTGACTCTTTAGCACAAGACCCTAGTCTAAAGAACAGTTGCAACAAATGCGGCGTCGAGTTCCCGTCGCTGAAGCAGCTGGTGGAACACGGGAAAGCGGAGCACGGCCGGGCGAGAAAGAAAACCAGCTGGAGTCTGCCGGGAGATTCTTATCCGACGCAGTGCGACCATTGCAGCGTGGTGGTGGGCAGCCGCGCGCAGCACTGGCGGCAcgtggcgcgcgcgcacccggccgcgcgcgcgcactaCCGGCCCGTCGTCACCGCCGTCTGCCACGCCTGCGGGAAGGGCTTCCAGAACTCCACAAAGCTGCGTCTCCACCTGCTGCGGCACTCGCCGCCGGCGCTGCCGTGCGCGGTGTGCGGGCGCGCGTTCCACGACAAGTACCTGCTGGCGCGCCacgccgccgcgcacgcgcccGCGCGCCCGCACCGCTGCCACGCCTGCCCGAGGGCGTTCAAGCAGCGAGCCAACCTGGCACGGCACTATCGGGTACACACAGGCGTTACCCCATACGAGTGTTCGATGTGCGGCAAAAAGTTCAAATATTCCACAAGCAGGAACTTGCACGTACGTACCGTGCATTACAAGCTGCCACATCCGCCGCGCAAGAGGCGCGGCAAAGCCAGAGACGGCGAAGGCGATAGcgatgataataaataa
Protein Sequence: MVAYCCVKGCTNNSSNKKKDPNDITSFHAFPTNIELKQKWVRAIGRPNWGPPSYARVCSAHFSYEQINHDGRRIRIKDDAVPVKDLPANSNFEASHVEVCRFCLAADLKMHSLQSGVHRVYMDSLVGYNENYTIEGLPQFVCYECAAHLRKCYNLIEKSMIAQATLLDIFAHNGKITKDLVRSKNRTELNLISPLGVYEVDTNEVECKEDSEFVNIDITQNEDETSSKTAEDFINTPKIEVTNFTQSEEIDDIDDYDVMDTNFHEENDERDEKLNDKFKCANHDVNIENFNVNDEVKTKLTSINDEEEEIRIYKKTRKRTKSSKRGLTPDEEEMEKYFTIVKLTLEQQIEEWNRSKGNTESSNETFKCQICSKVFAHRNSYQMHVLRHEPSRGRAECAVCKLRFKNDVLARSHANRTHGKKFHCKTCPKAFSNVGVAKKHHKWHVGHVYSCRWCPFASAHASALGAHARTQHATAHVCVVCGHAFVSARGLALHAATVHQEEPDREESLQYRCEECDLNFKTEGARRVHLLTSKQHKKNKSLCDSLAQDPSLKNSCNKCGVEFPSLKQLVEHGKAEHGRARKKTSWSLPGDSYPTQCDHCSVVVGSRAQHWRHVARAHPAARAHYRPVVTAVCHACGKGFQNSTKLRLHLLRHSPPALPCAVCGRAFHDKYLLARHAAAHAPARPHRCHACPRAFKQRANLARHYRVHTGVTPYECSMCGKKFKYSTSRNLHVRTVHYKLPHPPRKRRGKARDGEGDSDDNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00325453;
90% Identity: iTF_01135187;
80% Identity: iTF_01135821;