Basic Information

Insect: Pandemis corylana
Gene Symbol: -
Assembly: GCA_949127965.1
Location: OX421865.1:3073188-3083786[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.065 4.2 8.7 5.4 1 23 363 385 363 385 0.98

2 12 1.2 79 4.7 0.4 2 23 393 415 393 415 0.92

3 12 0.033 2.2 9.6 3.1 1 23 419 441 419 441 0.96

4 12 0.084 5.5 8.3 0.2 1 23 446 469 446 469 0.97

5 12 0.0092 0.6 11.3 0.1 1 23 473 496 473 496 0.95

6 12 0.0034 0.22 12.7 0.6 1 22 508 529 508 533 0.94

7 12 0.0053 0.34 12.1 0.3 1 23 551 574 551 574 0.92

8 12 3 2e+02 3.4 0.7 2 23 593 615 592 615 0.87

9 12 0.0015 0.096 13.8 1.7 2 23 629 650 629 650 0.97

10 12 0.001 0.067 14.3 0.1 2 23 656 677 655 677 0.91

11 12 1.5e-05 0.00094 20.1 3.0 1 23 683 705 683 705 0.98

12 12 5.5e-05 0.0036 18.3 1.8 1 23 711 734 711 734 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.065	4.2	8.7	5.4	1	23	363	385	363	385	0.98
2	12	1.2	79	4.7	0.4	2	23	393	415	393	415	0.92
3	12	0.033	2.2	9.6	3.1	1	23	419	441	419	441	0.96
4	12	0.084	5.5	8.3	0.2	1	23	446	469	446	469	0.97
5	12	0.0092	0.6	11.3	0.1	1	23	473	496	473	496	0.95
6	12	0.0034	0.22	12.7	0.6	1	22	508	529	508	533	0.94
7	12	0.0053	0.34	12.1	0.3	1	23	551	574	551	574	0.92
8	12	3	2e+02	3.4	0.7	2	23	593	615	592	615	0.87
9	12	0.0015	0.096	13.8	1.7	2	23	629	650	629	650	0.97
10	12	0.001	0.067	14.3	0.1	2	23	656	677	655	677	0.91
11	12	1.5e-05	0.00094	20.1	3.0	1	23	683	705	683	705	0.98
12	12	5.5e-05	0.0036	18.3	1.8	1	23	711	734	711	734	0.98

Sequence Information

Coding Sequence: ATGGTGGCGTATTGCTGTGTTAAAGGTTGCACTAACAACAGCAGCaacaaaaagaaagatcccAACGACATCACATCCTTTCATGCTTTTCCAACAAACATTGAATTGAAGCAAAAATGGGTCCGAGCTATCGGCAGACCAAACTGGGGGCCTCCAAGCTACGCTCGCGTGTGCAGTGCGCACTTCAGCTACGAACAGATCAACCACGACGGACGGAGGATTCGGATCAAAGATGATGCTGTTCCAGTTAAAGATTTACCTGCCAACTCTAATTTTGAGGCATCTCATATAGAAGTTTGTCGGTTCTGTCTTGCTGTTGATCTGAAGATGCACAGCCTCCAGAGTGGAGTGCACAGGGTCTACATGGATTCACTTGTTGCATATAATGAGAACTATACCATCGAAGGCCTTCCTCAATTTGTATGTTACGAATGTGCGGCGCATCTGCGGAAATGCTATTACCTCATAGAGAAAAGTATGATAGCTCAGGCAACTTTACTTGATATATTTGCACATAATGGGAAGATAACAAAAGATCTCATCAAATTCAAAAATAGAATGgaacttaatttaatatcatCATTGGGCATTTATGAAGTAGACACAAATGAAGTTGAATCCAAAGAGGATTCGgaatttgtaaatattgataTTACTCACAATGAAGATGAAAATAGTAGTAAAACTGTAGAAGATGATATAAATATGCCTAAAGTAGAAGTCACACGATTTGAAGAAGTAGATGATATTGATCACTGTGATGTAATGGATACTAATTTTCATGACGAGAATGATGAAAGGAATGAGAAATTGAATGACAAATCTAAATGTGCAAATCATGATGTtaataatgaaaattttaatgtaaataatgaagaaaaaactAAATTAGCTAGGATTTTTCATGAGGAAGAAGAAATTAGAATTTATGAAAAAACAAGAAAGAGGACGAAATCAAGTACAGCTGGACTGACGCCAGATGAAGTGGAAATGGAGAAATATTTTACCATCGTGAAATTAACATTAGAGCAACAAATAGAAGAATGGAACAGTAGCAAAGCCAACATGGAATTCAGCAGTGAAACCTTTAAATGCCAAATCTGCTGCAAAGTGTTTGCACACCGCAATTCTTATCAACTGCATGTTTTAAGACATGAACCAAGTAGAGGCAGAGCCGAGTGTGCGGTGTGCAAGCTTCGGTTCAAAAACGATGTGCTGGCCAAGTCCCACGCTAACCGGACGCACGGCAAGAAGTTCCACTGCAAGAACTGCCCCAAGGCGTTTAGTAATGTCGGCGTGGCAAAGAAGCACCACAAGTGGCACGTGGGTCACGTGTACGCGTGCCGCTCGTGTCCGTTCGCGAGCGCGCACGCGTCGGCGCTGGgcgcgcacacgcgcacgcagCACGCCACCGCGCACGTGTGCGTCGTGTGCGGACACGCGTTCGTCAGCGCACGGGGGCTCGCGCTGCACGCTGCTACTGTACACCAAGAGAAGCCTGATCGTGAAGAAAGTCAGCAGTATCGGTGTGAGCAGTGCGATCTCAACTTCAAGACGGAGGGCGCGCGACGCGTCCACATGCTGACCTCGAAGCAacataagaaaaataaaagtttatgTGACTCTTCCCCACAAGACCCCAGTTTAAAGCACAGTTGCAACAAATGCGGCGTCGAGTTCCCGTCGCTGAAGCAGTTAGTGGAACACGGGAAAGCGGAGCACGGCCGGACGAGAAAGAAAACTAGCTGGAGTCTGCCGGGGGACTCTTATCCGACGCAGTGCGAGCATTGCAGCGTGGTGGTGAGCAGCCGGGCGCAGCACTGGCGGCACGTGTCGGGCGCGCAcccggccgcgcgccgcctctaCCGGCCCGTCGTCACCGCCGTCTGCCACGCCTGCGGGAAGGGCTTCCAGAACTCCACAAAGCTGCGTCTCCACCTGCTGCGGCACTCGCCGCCGGCGCTGCCGTGCGCCGTGTGCGGGCGCGCGTTCCACGACAAGTACCTGCTGGCGCGCCACGCCGCCGCGCATGCGTCCGCGCGCCCGCACCGCTGCCACGCCTGCCCGAGGGCGTTCAAGCAGCGAGGCAACCTGGCACGACACTATCGGGTACACACAGGTGTTACCCCATACGAATGTACGATGTGCGGCAAAAAGTTCAAATATTCGACAAGCAGGAACCTGCACGTGCGTACCGTGCATTACAAGCTGCCACATCCGCCGCGCAAGAGGCGCGGCAAAGCCAGAGACGGTGAAGGTGATAGCgaggataataaataa
Protein Sequence: MVAYCCVKGCTNNSSNKKKDPNDITSFHAFPTNIELKQKWVRAIGRPNWGPPSYARVCSAHFSYEQINHDGRRIRIKDDAVPVKDLPANSNFEASHIEVCRFCLAVDLKMHSLQSGVHRVYMDSLVAYNENYTIEGLPQFVCYECAAHLRKCYYLIEKSMIAQATLLDIFAHNGKITKDLIKFKNRMELNLISSLGIYEVDTNEVESKEDSEFVNIDITHNEDENSSKTVEDDINMPKVEVTRFEEVDDIDHCDVMDTNFHDENDERNEKLNDKSKCANHDVNNENFNVNNEEKTKLARIFHEEEEIRIYEKTRKRTKSSTAGLTPDEVEMEKYFTIVKLTLEQQIEEWNSSKANMEFSSETFKCQICCKVFAHRNSYQLHVLRHEPSRGRAECAVCKLRFKNDVLAKSHANRTHGKKFHCKNCPKAFSNVGVAKKHHKWHVGHVYACRSCPFASAHASALGAHTRTQHATAHVCVVCGHAFVSARGLALHAATVHQEKPDREESQQYRCEQCDLNFKTEGARRVHMLTSKQHKKNKSLCDSSPQDPSLKHSCNKCGVEFPSLKQLVEHGKAEHGRTRKKTSWSLPGDSYPTQCEHCSVVVSSRAQHWRHVSGAHPAARRLYRPVVTAVCHACGKGFQNSTKLRLHLLRHSPPALPCAVCGRAFHDKYLLARHAAAHASARPHRCHACPRAFKQRGNLARHYRVHTGVTPYECTMCGKKFKYSTSRNLHVRTVHYKLPHPPRKRRGKARDGEGDSEDNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00325453;
90% Identity: iTF_01134854; iTF_01136141; iTF_01135821;
80% Identity: iTF_01134854;