Phep024744.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978032.1:3305529-3308879[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 1 67 4.9 0.2 2 23 12 34 11 34 0.83 2 24 0.031 2 9.7 3.0 1 23 38 61 38 61 0.94 3 24 6 3.9e+02 2.5 0.1 3 23 221 243 220 243 0.91 4 24 0.006 0.39 12.0 0.2 2 23 249 271 248 271 0.94 5 24 0.00016 0.011 16.9 0.5 1 23 276 299 276 299 0.92 6 24 0.02 1.3 10.3 0.9 1 23 304 327 304 327 0.93 7 24 0.0028 0.19 13.0 4.1 1 23 331 354 331 354 0.97 8 24 0.0038 0.25 12.6 0.7 2 23 361 382 360 382 0.96 9 24 0.25 17 6.9 0.7 1 10 388 397 388 401 0.96 10 24 0.005 0.33 12.2 0.2 1 23 441 463 441 463 0.95 11 24 0.011 0.72 11.1 0.3 3 23 492 513 490 513 0.90 12 24 0.008 0.53 11.6 0.8 2 23 534 556 533 556 0.94 13 24 0.0019 0.13 13.5 4.3 2 23 562 584 561 584 0.96 14 24 0.039 2.6 9.4 0.6 1 23 589 612 589 612 0.94 15 24 0.00056 0.037 15.2 1.4 3 23 616 637 614 637 0.95 16 24 0.0066 0.44 11.8 5.0 1 23 719 742 719 742 0.96 17 24 0.05 3.3 9.1 0.1 2 23 770 792 769 792 0.94 18 24 0.0022 0.15 13.3 0.1 1 23 814 837 814 837 0.91 19 24 1.9e-06 0.00013 23.0 0.5 3 23 844 865 842 865 0.95 20 24 0.00023 0.015 16.4 0.5 1 23 871 894 871 894 0.96 21 24 0.00014 0.0091 17.1 0.0 3 23 901 922 900 922 0.97 22 24 0.00023 0.015 16.4 4.3 1 23 926 949 926 949 0.97 23 24 0.00065 0.043 15.0 0.4 2 23 956 977 955 977 0.97 24 24 0.036 2.4 9.5 1.6 1 23 983 1005 983 1005 0.96
Sequence Information
- Coding Sequence
- ATGGTCATAGAGCAGTACAAGCTGCTAGGCCTCAGCTGTCCGCTGTGCGAGGAATCGTTTTCCGAAATGGCATTTTTAAACTTCCACGTCAGCACCAGACACTCGGATAATTTCCAATGCGAATTTTGTTCCGAAATGTTCCAAAAGAAAAAGGATCTCAAGTTACATAATAAATTGTTTCACGCCCACCCTTATGATGATCAGATAGACATGTGCGTGAAAGAAGAGCCAGGACTGAGCAGTACCAAGTTGAAGAGTttagattttgatgcggctgaGAGGAAAAGGATAGCGAAGTTGCGACGCGAGAACATTGCGTGCATCTTAAACATGTCTACTGCGACCCCTTTCAAATACTACATGAACCGTTTTCgttgtttttattgtacaaataatcACACAGAATTCGAGCCAATACGAACGCATAGTATCACCAAACATCCTTACTGTGATCCATCAGGGAAAGCCATGAAGTCTATCAAGGGGAAAGACGCTATCGTCAAAATAGACATCTCGTCGTTAGCTTGCAAACTGTGTTGCACATCCATCTCGGACTTGGACGCTCTCTCTGACCATTTAATATCAAATCATAAAACCAAATACGACAAATCCATGATCAGTATAGTTCAGCCTTTTAAAATTTCGAAAGACAATATGGCGTGTCCCCTATGCCCTAACGTTGCGTTTAGATACTTTGTCAAATTACTCGAGCATATGAATGAGAGTCATTCTAACAATAATGTCGTCTGTGTATATTGTGGTCAGACCTTTAGAAATACTCCGTCCTATAGGGGACATTTAGCCAGGTATCACAGGGATAGCGAGTGCAAATGTCCAGACTGCGACTTGTCTTTCTCTAATATTGCCAAATTGACAGCTCATAGAGCTAACATACACGGCACGAAAACATTTAAATGTTCCAAATGCAGCGAGAAGTTTGCTACGGTTTATTTGAGACAGAAACATCTGATAGACGCTCACGGATCAGGTCACAAATGTACCTTCTGCAATAGGCTGTTCGCTCGGAACTCTTACATGAAGGATCACGTAAGAAGACTACACTTGAAAGAAAAGAACGTAGAATGTTCAGTTTGCAAAGAAAAGTTCTTTGATAAAACCAGATTGAACATTCACATGGTGAAACATATAGGAGAGCGGAATTACCACTGCGATATCTGCGGAAAGACTTTTCTGTGGAAGAAAAATTTGAGGGATGAAATTGGGCTGAAAAACGTGAAAAGCACAAATTATCGCAAGAGGAGAAATCTGCAAATAATATTCAACAACACCTCGATGATACCGTTCAAATGGCGGCAAAAATATCTATGTTTTTACTGTGGCGAGGACGTCGCGGATTACGATATGTTGAGGAAACACACGCGGGCGCACGGCGCGTGCTCGCTTACCGACCGCGCGCTCAGCCGCGTCTCGGGCACCGATATAGAAATCAAAATAGACGTCTCCGACACCATATGCGAAATATGCGACGAGCAATACACCAACTTCGACGAGCTGATCACTCATTTAGTCCATAACCATAACTTACCGTACGACAAACATTCCGACCTCATTATAATGAAGTACCGCTTAGCTGACCTCAAATGCTTACTCTGCGACGAGAGTTTCAACCATTTCGGTAAACTCATCGTCCATGTAAACAACAGCCACCCTATGAAATTCCTCTCCTGCGATGTCTGCCATCAGAAATTTAATAAGCACAGGGACTTAACCGCTCATCTCAGGTCCTACCACAAAAAAGAAGGGTACAATTGCACCCAATGCGCCGTTAGCTTCCCTACCAACTGGGCACTTAGCAATCACAAATTCAAAACGCACTCTtccatttgtaatatttgcTTCAAAAGTTTCTCGTCGTCGGACAAGAGATTGAAGCATATGAAATTAGAACACGTTGTCGATGAGTTTCTGCAGTGCGGCTTTTGTCTCAAAACCATGAACACTAAACAGGGTTTCTTGCGGCACGCTGCGCACTGCACATCCATGTCTGACGACTCTAAAACTCAACGTATTGTCGATGATATCGTCTCCATAGATGACAGCGAAAGAAAACCCAATGTTAAACAGATAAGGAACAACATAGCTTGCATACTCAACATGTCTACCGCTATACCGTTTAAACATTTCATGAATAAATTTAGATGTTTCTATTGCACTAAACATTTTACAGAATGCGATGATCTCAAAGAGCACACTATCATTGAGCATCCCCATTGCGATTCCAAGTTTAAATCCATGAGATTGCGCAACAGGGATGATATTTCTATCAAAATAGACACTTCCGCGTTATCTTGTAAGATTTGCTTCGAAACTTTGAACGATCTGGAACAACTTATAGACCATTTAACCTCTGAACACAAGACACGCTACGATAAATCAGTAGAAATTAACGTCCAGCCCTACAAATTGATCAAAGATAACTTCGCTTGTCCTTTTTGTGGGGAAATCTATAGATACTTTAGCACTTTATTGAGACATGTGAGCGGCGCTCACACGGACAACAAAACTATATGCATGTACTGCGGAAAATCTTTTAGAACTAAACCGAATTTAAGGGCGCACATAGCGCGTCGACACAAAGTAGGAAAGGTTTACAAATGCGCGACTTGCAAATACGAGTTCGCAAGGAATATAGATCTGCGTACGCACATGGGCAGAGTTCATGGCAATAAAATGGTAGACTGTCCCGAATGTCCGGAGAAGTTTATATCTCAGTACGCGATGCAGAGGCATCTCATTACGGCGCACGCGTCCGGCCACAAGTGCTCGTACTGTGGCAAGCTTTTCACGAGGAATTCCTTCATGGACAACCACATTAGACGGACGCATTTAAAAGAGAAAAACGTTCAGTGCTCGCTGTGCAACGAGAGATTTTTCGATTCGGCGCTCCTTAAAATGCACATGGTCAAGCATATAGGAGAGCGAAACTTCCACTGTGACGTCTGCGGAAAGAAGTTTCTGTGGAAGAAAAACCTTCGCGGCCACATGGCGTCTCACGTTAAAAACGCTAACGCTCAAGCGCTAACTTGA
- Protein Sequence
- MVIEQYKLLGLSCPLCEESFSEMAFLNFHVSTRHSDNFQCEFCSEMFQKKKDLKLHNKLFHAHPYDDQIDMCVKEEPGLSSTKLKSLDFDAAERKRIAKLRRENIACILNMSTATPFKYYMNRFRCFYCTNNHTEFEPIRTHSITKHPYCDPSGKAMKSIKGKDAIVKIDISSLACKLCCTSISDLDALSDHLISNHKTKYDKSMISIVQPFKISKDNMACPLCPNVAFRYFVKLLEHMNESHSNNNVVCVYCGQTFRNTPSYRGHLARYHRDSECKCPDCDLSFSNIAKLTAHRANIHGTKTFKCSKCSEKFATVYLRQKHLIDAHGSGHKCTFCNRLFARNSYMKDHVRRLHLKEKNVECSVCKEKFFDKTRLNIHMVKHIGERNYHCDICGKTFLWKKNLRDEIGLKNVKSTNYRKRRNLQIIFNNTSMIPFKWRQKYLCFYCGEDVADYDMLRKHTRAHGACSLTDRALSRVSGTDIEIKIDVSDTICEICDEQYTNFDELITHLVHNHNLPYDKHSDLIIMKYRLADLKCLLCDESFNHFGKLIVHVNNSHPMKFLSCDVCHQKFNKHRDLTAHLRSYHKKEGYNCTQCAVSFPTNWALSNHKFKTHSSICNICFKSFSSSDKRLKHMKLEHVVDEFLQCGFCLKTMNTKQGFLRHAAHCTSMSDDSKTQRIVDDIVSIDDSERKPNVKQIRNNIACILNMSTAIPFKHFMNKFRCFYCTKHFTECDDLKEHTIIEHPHCDSKFKSMRLRNRDDISIKIDTSALSCKICFETLNDLEQLIDHLTSEHKTRYDKSVEINVQPYKLIKDNFACPFCGEIYRYFSTLLRHVSGAHTDNKTICMYCGKSFRTKPNLRAHIARRHKVGKVYKCATCKYEFARNIDLRTHMGRVHGNKMVDCPECPEKFISQYAMQRHLITAHASGHKCSYCGKLFTRNSFMDNHIRRTHLKEKNVQCSLCNERFFDSALLKMHMVKHIGERNFHCDVCGKKFLWKKNLRGHMASHVKNANAQALT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00654522;
- 90% Identity
- -
- 80% Identity
- -