Efoe036064.2
Basic Information
- Insect
- Epiblema foenella
- Gene Symbol
- -
- Assembly
- GCA_963556455.1
- Location
- OY747119.1:4077337-4080922[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.94 75 5.3 0.1 3 23 78 99 77 99 0.95 2 24 0.0067 0.53 12.0 0.7 2 23 120 142 119 142 0.94 3 24 0.0043 0.34 12.7 0.5 2 23 148 170 147 170 0.94 4 24 0.0067 0.53 12.0 0.1 2 23 356 378 355 378 0.95 5 24 2.9e-05 0.0023 19.5 0.5 2 23 384 406 383 406 0.92 6 24 0.0071 0.57 11.9 0.7 1 23 411 434 411 434 0.93 7 24 0.00057 0.045 15.4 3.6 1 23 438 461 438 461 0.97 8 24 0.0051 0.4 12.4 0.7 2 23 468 489 467 489 0.96 9 24 0.0095 0.76 11.6 1.9 1 23 495 517 495 517 0.97 10 24 0.0064 0.51 12.1 0.1 1 23 556 578 556 578 0.95 11 24 0.13 10 8.0 0.4 3 23 607 628 605 628 0.94 12 24 7.1 5.6e+02 2.5 1.1 3 23 650 671 648 671 0.87 13 24 0.0022 0.18 13.5 3.4 2 23 677 699 676 699 0.96 14 24 1.2 95 4.9 0.4 1 23 704 727 704 727 0.92 15 24 0.00061 0.048 15.3 0.9 2 23 730 752 729 752 0.95 16 24 0.026 2.1 10.2 3.9 1 23 834 857 834 857 0.96 17 24 0.23 18 7.2 0.5 2 23 885 907 884 907 0.94 18 24 0.00038 0.03 15.9 0.1 1 23 929 952 929 952 0.91 19 24 2.9e-06 0.00023 22.6 0.5 3 23 959 980 958 980 0.95 20 24 0.0014 0.11 14.2 0.7 1 23 986 1009 986 1009 0.96 21 24 0.0012 0.096 14.4 0.2 3 23 1016 1037 1015 1037 0.96 22 24 0.00031 0.024 16.2 4.3 1 23 1041 1064 1041 1064 0.97 23 24 0.00012 0.0096 17.5 0.4 2 23 1071 1092 1070 1092 0.97 24 24 0.048 3.8 9.4 1.6 1 23 1098 1120 1098 1120 0.96
Sequence Information
- Coding Sequence
- ATGGCCTGCGAAACGGCGCGGCAGCAAAATCTGCAAATACTGTTTCACAGCACCAGCGTCATACCATTCCAATGGAACAAACGTTTTTCGTGTTGCTACTGTAGCTCTAGCGAGCTTCAGTGCGACGAATTAGTCAAACATACCAAGTCGCACGGGAAAAGCGTAATAGAGGACTTTTTATCTAAACTCCAGCCTAAAGTCGTTCTTAAAGTAGACGTTTCTGATCCCATATGCGAGCTTTGCGATGTGAACTCCCAAAACTTAGATAGTCTCACTGATCACCTCGTTACGGTGCATGATTTGAAGTACCACAGACAAGTCGAAATGCGCATAGAGCTATTTAAATTGATAAACCTCAGTTGTCCATTGTGTGAGGAACATTTCACAAATATGGAACTCCTAAATACTCATGTTAGTTCACGGCATTCAAACGTCAATTTACAATGTGAATTGTGTTCTGAAATGTTCGCTAAgaaaaaggatttaaaattACACAAGCAATTGGCTCATTCTGACAATTATGATTTTGATGCTCACATTATACGTATCAAAGAAGAACCAGATGTTAGAGTGAGTAAAAAAGATGTCGACGCAATAGATAAGAAAAGGATAGCTAAGCTCAGGCGGGAGAATATTGCTTGCATCTTAAACACATCCACAGCTTTGCCTTTTAAGTTCTACATGAATCGATTTCGTTGCTTTTATTGTTCGAAGAATCATTCAGAATTTGAACCAATCAAAAGCCATATGGTCACCAAACATCCTTACTGCGATCCGGCGGGGAAAGCCCTAAAAGCGGTAAAAGGGAAAGATGCTATCGTTAAAGTCGACATTAGTTCCCTCGCTTGCAAGTTATGTTGCATGTCAATTACCGATCTAGACGCCCTCTACGATCATCTAATATCAAATCATAAAATGCAATACGATAAATCCATGACGAGTATAGTCCAACCTTTTAAAATTGCCAAGGACAACATGGCGTGCCCACTCTGTCCAGACGTTGGTTTTAGGTATTTTGTAAAGCTATTAGAACACATGAATGAAAGCCATTCCGATAACAACGTAGTGTGCGTATACTGCGGCCAAACTTTTAGGAGTACGCCGTCTTATAGGGGCCATATAGCGAGGTATCACAGACCGAACTCGTGCCGGTGTCCTGAATGCGATTTGATGTTTTCTAATCCATCCAAACTTACGGCTCATAGAGCTAACGCACACGGAATAAACACATTCAAATGCTCAAAATGCGATGAGAAGTTTGCTACGATATATCTTAGGCAGAAACATCTAATAGACGTCCATAGCTCCGGACACAAATGTACTTTCTGCGACAGACTATTCGCTAGGAACTCCTACATGAAGGACCATATAAGAAGGTTgcatttgaaagaaaaaaacgtGGAATGCTCAGTTTGCAAAGAGAAGTTCTTTGACAAGACTAGACTGAACATACACATGGTGAAACATATCGGGGAGAGGAATTATCACTGTGATATTTGTGGAAAAACTTTTCTATGGAAGAAAAATTTAAGAGGCCACATGTCTTCGCACAAACGAAATGAAATTGGGCTGAAAAACGTGAAAAGCACCAATTATCGGAAGAGGAGAAATCTACAAATAATTTTCAACAACACCTCCATAATACCGTTCAAATGGCGGCAAAAGTATCTTTGTTTTTACTGTGGTGAGGACGTGCCGGACTATGATGCGCTTAGGAAGCACACGAGGGCACACGGCGCCTGTTCTTTGACCGACCGGGCGCTCAGCCGAGTCTCTGGCACTGAAGTCGAGATCAAAATTGACGTGTCCGACACTATTTGCGAACTATGTGACGAAAACTTTCCCAACTTCGACGATATTATTTCGCATTTAATGCACAAACACAATTTGCCGTACGACAAACACGCTGACCTTATCATCATGAAATACCGATTAGTCGATCTTAAATGTATATTATGTGAAGATAGCTTTAATCACTTCAGCAAGCTCATCGTCCATGTCAATAATAACCATCCTATGAAGTTCCTTTCATGCAGTGTATGCCACCAGAAATTTAATAAGCAACGGGACTTAACCGCTCATTTTAGATCGTACCATAAAAAGGGAGGTTATACCTGTATTCAATGTGCTATAAGCTTTCCTACCAACTGGGCGCTCAGCAATCACAAATTTAAAACACACTCTTCTGTCTGTAACATATGTTTCAAAAGCTTTTCTTCGGCAGATAAACGGTTAAAGCATATGAAACTAGAACATATAGATGATGGTTTTTTACAATGCGGATTTTGTTTAAAAACTATGAATACGAAACAAGGTTTTTTGCGACACGCGGCTCATTGCACTTCAGGGAGAGGCGATACTAAAACGCAGCACATTATTGACGAGGTCGTGGCCATAGATGATAGCGAGAGAAAACCCAACGTTAAACAGATTAGAAATAATATCGCCTGTATATTGAACATGTCCACTGCGATTCCGTTTAAACATTTCATGAATAAATTTAGGTGTTTCTATTGCTCTAAACATTTTATAGAATGTGAAGAACTTAAAGAACATACTATTGTCGAGCATCCCCATTGCGATTCTAAGTTTAAATCTATGAAGTTACGTAACAGAGAAGATATTTCCATTAAAATAGACACATCGTCGTTATCTTGTAAAATTTGCTTCGAATCTATGAACGATTTGGATCATTTAATAGACCACCTAACTTCTGAACACAAGACGCACTATGACAAATCTGTAGAAATGAATGTTCAACcgtacaaattaattaaagacCATTTCGCATGTCCGTTTTGCGGAGAGGCGTTTAGGTACTTTAGCACTTTATTACGCCATGTCAGTGGCGCCCATACGGAGAACAATAATATATGCATGTATTGCGGAAAATCGTTCAGAACGAAACCTAATTTGCGAGCTCATATAGCGCGGCGTCACAAAATAGGCAAGATTTACAAGTGTGTCACTTGCAAACTAGATTTCACAAGAACAGTAGATTTACGTACGCATATGGGCAGGGTCCATGGCGACAAAATGGTGGACTGTCTGGAGTGCCCGGAGAAGTTTGTGTCGCAATACTCGATGCAGAGGCATCGCATCACTGTACACGGCTCCGGCCACAAGTGTTCCTACTGCGGCAAACTGTTCACGAGAAACTCCTTCATGGACAACCATATTAGACGGACCCATCTTAAAGAGAAAAACGTACAGTGCTCGATCTGCAACGAGAGATTTTTCGATTCAGCACTCCTTAAAAACCATATGGTGAAACATATAGGCGAGCGGAATTTCCACTGTGATGTCTGTGGTAAGAAATTCCTTTGGAAGAAAAACCTCCGCGGCCACATGGCTTCCCATGTTAAAAACGCTAACGCTCAAGCACTTACCTGA
- Protein Sequence
- MACETARQQNLQILFHSTSVIPFQWNKRFSCCYCSSSELQCDELVKHTKSHGKSVIEDFLSKLQPKVVLKVDVSDPICELCDVNSQNLDSLTDHLVTVHDLKYHRQVEMRIELFKLINLSCPLCEEHFTNMELLNTHVSSRHSNVNLQCELCSEMFAKKKDLKLHKQLAHSDNYDFDAHIIRIKEEPDVRVSKKDVDAIDKKRIAKLRRENIACILNTSTALPFKFYMNRFRCFYCSKNHSEFEPIKSHMVTKHPYCDPAGKALKAVKGKDAIVKVDISSLACKLCCMSITDLDALYDHLISNHKMQYDKSMTSIVQPFKIAKDNMACPLCPDVGFRYFVKLLEHMNESHSDNNVVCVYCGQTFRSTPSYRGHIARYHRPNSCRCPECDLMFSNPSKLTAHRANAHGINTFKCSKCDEKFATIYLRQKHLIDVHSSGHKCTFCDRLFARNSYMKDHIRRLHLKEKNVECSVCKEKFFDKTRLNIHMVKHIGERNYHCDICGKTFLWKKNLRGHMSSHKRNEIGLKNVKSTNYRKRRNLQIIFNNTSIIPFKWRQKYLCFYCGEDVPDYDALRKHTRAHGACSLTDRALSRVSGTEVEIKIDVSDTICELCDENFPNFDDIISHLMHKHNLPYDKHADLIIMKYRLVDLKCILCEDSFNHFSKLIVHVNNNHPMKFLSCSVCHQKFNKQRDLTAHFRSYHKKGGYTCIQCAISFPTNWALSNHKFKTHSSVCNICFKSFSSADKRLKHMKLEHIDDGFLQCGFCLKTMNTKQGFLRHAAHCTSGRGDTKTQHIIDEVVAIDDSERKPNVKQIRNNIACILNMSTAIPFKHFMNKFRCFYCSKHFIECEELKEHTIVEHPHCDSKFKSMKLRNREDISIKIDTSSLSCKICFESMNDLDHLIDHLTSEHKTHYDKSVEMNVQPYKLIKDHFACPFCGEAFRYFSTLLRHVSGAHTENNNICMYCGKSFRTKPNLRAHIARRHKIGKIYKCVTCKLDFTRTVDLRTHMGRVHGDKMVDCLECPEKFVSQYSMQRHRITVHGSGHKCSYCGKLFTRNSFMDNHIRRTHLKEKNVQCSICNERFFDSALLKNHMVKHIGERNFHCDVCGKKFLWKKNLRGHMASHVKNANAQALT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01135996;
- 90% Identity
- -
- 80% Identity
- -