Basic Information

Insect: Pandemis heparana
Gene Symbol: -
Assembly: GCA_963854515.1
Location: OY978032.1:8891534-8894883[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.0031 0.2 12.9 2.0 1 23 136 158 136 158 0.99

2 24 0.0031 0.2 12.9 7.2 1 23 167 189 167 189 0.98

3 24 2.3e-06 0.00015 22.7 0.9 1 23 195 217 195 217 0.98

4 24 2e-05 0.0013 19.8 3.9 1 23 223 245 223 245 0.98

5 24 3.5e-05 0.0023 19.0 1.7 1 23 251 273 251 273 0.98

6 24 0.0061 0.41 11.9 5.8 1 23 279 301 279 301 0.97

7 24 0.0014 0.09 14.0 3.2 1 23 307 329 307 329 0.98

8 24 0.0013 0.089 14.0 3.0 1 23 335 357 335 357 0.98

9 24 5.9e-06 0.00039 21.4 4.8 1 23 363 385 363 385 0.98

10 24 0.0088 0.58 11.4 1.5 1 23 391 413 391 413 0.96

11 24 0.0016 0.11 13.7 3.7 1 23 419 441 419 441 0.98

12 24 4.1e-05 0.0027 18.8 4.4 1 23 447 469 447 469 0.98

13 24 7.2e-06 0.00048 21.1 3.7 1 23 475 497 475 497 0.98

14 24 7.2e-05 0.0048 18.0 4.9 1 23 503 525 503 525 0.98

15 24 5.9e-06 0.00039 21.4 4.8 1 23 531 553 531 553 0.98

16 24 0.0088 0.58 11.4 1.5 1 23 559 581 559 581 0.96

17 24 0.0016 0.11 13.7 3.7 1 23 587 609 587 609 0.98

18 24 4.1e-05 0.0027 18.8 4.4 1 23 615 637 615 637 0.98

19 24 7.2e-06 0.00048 21.1 3.7 1 23 643 665 643 665 0.98

20 24 7.2e-05 0.0048 18.0 4.9 1 23 671 693 671 693 0.98

21 24 7.8e-05 0.0051 17.9 4.9 1 23 699 721 699 721 0.98

22 24 2.2e-05 0.0015 19.6 5.7 1 23 727 749 727 749 0.98

23 24 0.0001 0.0066 17.6 5.5 1 23 755 777 755 777 0.98

24 24 0.034 2.3 9.6 5.5 1 23 783 805 783 805 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.0031	0.2	12.9	2.0	1	23	136	158	136	158	0.99
2	24	0.0031	0.2	12.9	7.2	1	23	167	189	167	189	0.98
3	24	2.3e-06	0.00015	22.7	0.9	1	23	195	217	195	217	0.98
4	24	2e-05	0.0013	19.8	3.9	1	23	223	245	223	245	0.98
5	24	3.5e-05	0.0023	19.0	1.7	1	23	251	273	251	273	0.98
6	24	0.0061	0.41	11.9	5.8	1	23	279	301	279	301	0.97
7	24	0.0014	0.09	14.0	3.2	1	23	307	329	307	329	0.98
8	24	0.0013	0.089	14.0	3.0	1	23	335	357	335	357	0.98
9	24	5.9e-06	0.00039	21.4	4.8	1	23	363	385	363	385	0.98
10	24	0.0088	0.58	11.4	1.5	1	23	391	413	391	413	0.96
11	24	0.0016	0.11	13.7	3.7	1	23	419	441	419	441	0.98
12	24	4.1e-05	0.0027	18.8	4.4	1	23	447	469	447	469	0.98
13	24	7.2e-06	0.00048	21.1	3.7	1	23	475	497	475	497	0.98
14	24	7.2e-05	0.0048	18.0	4.9	1	23	503	525	503	525	0.98
15	24	5.9e-06	0.00039	21.4	4.8	1	23	531	553	531	553	0.98
16	24	0.0088	0.58	11.4	1.5	1	23	559	581	559	581	0.96
17	24	0.0016	0.11	13.7	3.7	1	23	587	609	587	609	0.98
18	24	4.1e-05	0.0027	18.8	4.4	1	23	615	637	615	637	0.98
19	24	7.2e-06	0.00048	21.1	3.7	1	23	643	665	643	665	0.98
20	24	7.2e-05	0.0048	18.0	4.9	1	23	671	693	671	693	0.98
21	24	7.8e-05	0.0051	17.9	4.9	1	23	699	721	699	721	0.98
22	24	2.2e-05	0.0015	19.6	5.7	1	23	727	749	727	749	0.98
23	24	0.0001	0.0066	17.6	5.5	1	23	755	777	755	777	0.98
24	24	0.034	2.3	9.6	5.5	1	23	783	805	783	805	0.94

Sequence Information

Coding Sequence: ATGTCCTGTGTGGTGCGGGGCATGCAGCGCGCGGAGCTCGGGGTCAAGCAGGAGCCGCCGCAGTCGCCCGAAGacgccgcggcgccgccagTTGACGGTGCAGAGCAGACCATGGTGAAGCAAGAGTGCAGCAACGACACCAACAACAGCTTGGAAGACTCCTGCGCCAGTAGTGAATGTTCGGGAGAGTACCTCAAGGAGGAGCCTGCAGTTACTGGCGACTGCAATGAAGAGCTTCTTATGCTAATGCTCAGGCCTTGCTCTGTCCGGCTGGATCGCACCCTAGTGGAGAAATACACCACAAGCACACTGTGTGCAACACCATACCACAGATCACACAATAAGCCTCTTGAATCTTATAGTAAAACGGTTAAAATAGGAAAAAATCACACTCAAGAGAAACTTTATAAATGCAACGTTTGTATGGAACAGTTCTCGAGTAAGTATTATTTGGCTCTGCACAAGAAGTCTCATGGCACCGACACACCAGCGATCTCTTACTGCTGCGGCATTTGCAACAAAAACTTTAAAGGCAAGCATCATTTAGATATCCATACGCGGAGTCACCTGGGAAAGACTCTCTACAGCTGCGATGTCTGTCAGAAGCAGTTCTCGCAACGCGCGAACTTAAATATTCATAAACGTGTTCATACGAGGCAGAAAGCCTATAGCTGTGATGTCTGTCAGAAGCAGTTCTCGCAAAAGACGCACTTAAATTTACATAAACGTGTTCATACGGGGCAGAAACCCTACAGCTGCGATGTCTGTCAGAAGCAGTTTTCACTACGGTCGACTTTAAATAATCATAAACGTATCCACACAGGGGAGAAGCCTTACTGCTGCGATGTCTGTCAGAAGCAGTTCTCACAACAGTCGAGCTTAATTTGTCATAAACGTATCCACACAGGGGAGAAGTCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTTGCGAAGTTCGCAATTAAATATCCATAAACGTATCCACACAGGGGAGAAGCCTTACTGCTGCGATGTCTGTCTGAAGCAGTTCTCACAACGGTCGACCTTAGATGATCATAAACGTATCCACACAGGGGAGAAGTCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTCGCGAAGTTCgcaattaaataaacataaacgtaTCCACACAGGGGAGAAGCCTTACTGCTGCGATGTCTGTCAGAAACAGTTCTCACAATGGTCGATCTTAGATGGTCATAAACGTATCCACATAGGGGAGAAGTCTTACTGCTGCGATGTCTGTCAGAAAAAGTTCTGGAAACGGTCAAACTTAAATATCCATAAACGTGTCCACACAGGGGAGAAGTCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTCGCAAAGTGCGCACTTAAATGTCCATAAACGTGTCCACACAGGGGAGAAGCCTTACTTCTGTGATGTCTGTCAGAAGCAGTTCTCGCGAAATTCGCACTTAAATATCCATAAACGTATCCACACAGGGGAGAAGCCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTCGCGAAGTTGGCACTTAAATATCCATAAACGTGTCCACACAGGGGAGAAGCCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTCGCGAAGTTCgcaattaaataaacataaacgtaTCCACACAGGGGAGAAGCCTTACTGCTGCGATGTCTGTCAGAAACAGTTCTCACAATGGTCGATCTTAGATGGTCATAAACGTATCCACATAGGGGAGAAGTCTTACTGCTGCGATGTCTGTCAGAAAAAGTTCTGGAAACGGTCAAACTTAAATATCCATAAACGTGTCCACACAGGGGAGAAGTCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTCGCAAAGTGCGCACTTAAATGTCCATAAACGTGTCCACACAGGGGAGAAGCCTTACTTCTGTGATGTCTGTCAGAAGCAGTTCTCGCGAAATTCGCACTTAAATATCCATAAACGTATCCACACAGGGGAGAAGCCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTCGCGAAGTTGGCACTTAAATATCCATAAACGTGTCCACACAGGGGAGAAGCCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTCGCGAAGTTGGCACTTAAATATCCATAAACGTATCCACACAGGGGAGAAGCCTTACTGCTGTGATGTCTGTCAGAAGCAGTTCTCGCGAAATTCGCACTTAAATATCCATAAACGTGTCCACACAAGGGAGAAGCCTTACTGCTGCGATGTCTGTCAGAAGCAGTTCTCGCAAAGTACGCACTTAAATGTCCATAAACGTATCCACACAGGGGAGAAGCCTTTCTGCTGTGATGTCTGTCAGCTAAGATTCACTCATAAACATAAGCTGATGGAGCACGTTGGGATCCACGTGTGGGTGCCGGAACGCGGCGCGCCGGGGACGGCCGGGGCTGAGGGGCGGCCGGGGCTGCGCAGCGGCGGGGGCTGCGGGCCCTCCGGGGGCCATCGCACGCTCGAGGACCCGCGGGGGTGA
Protein Sequence: MSCVVRGMQRAELGVKQEPPQSPEDAAAPPVDGAEQTMVKQECSNDTNNSLEDSCASSECSGEYLKEEPAVTGDCNEELLMLMLRPCSVRLDRTLVEKYTTSTLCATPYHRSHNKPLESYSKTVKIGKNHTQEKLYKCNVCMEQFSSKYYLALHKKSHGTDTPAISYCCGICNKNFKGKHHLDIHTRSHLGKTLYSCDVCQKQFSQRANLNIHKRVHTRQKAYSCDVCQKQFSQKTHLNLHKRVHTGQKPYSCDVCQKQFSLRSTLNNHKRIHTGEKPYCCDVCQKQFSQQSSLICHKRIHTGEKSYCCDVCQKQFLRSSQLNIHKRIHTGEKPYCCDVCLKQFSQRSTLDDHKRIHTGEKSYCCDVCQKQFSRSSQLNKHKRIHTGEKPYCCDVCQKQFSQWSILDGHKRIHIGEKSYCCDVCQKKFWKRSNLNIHKRVHTGEKSYCCDVCQKQFSQSAHLNVHKRVHTGEKPYFCDVCQKQFSRNSHLNIHKRIHTGEKPYCCDVCQKQFSRSWHLNIHKRVHTGEKPYCCDVCQKQFSRSSQLNKHKRIHTGEKPYCCDVCQKQFSQWSILDGHKRIHIGEKSYCCDVCQKKFWKRSNLNIHKRVHTGEKSYCCDVCQKQFSQSAHLNVHKRVHTGEKPYFCDVCQKQFSRNSHLNIHKRIHTGEKPYCCDVCQKQFSRSWHLNIHKRVHTGEKPYCCDVCQKQFSRSWHLNIHKRIHTGEKPYCCDVCQKQFSRNSHLNIHKRVHTREKPYCCDVCQKQFSQSTHLNVHKRIHTGEKPFCCDVCQLRFTHKHKLMEHVGIHVWVPERGAPGTAGAEGRPGLRSGGGCGPSGGHRTLEDPRG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01135978;
90% Identity: -
80% Identity: -