Phep006428.3
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- Rfx2
- Assembly
- GCA_963854515.1
- Location
- OY978010.1:15627703-15651304[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.3 7.6e+03 -1.7 0.0 3 15 234 246 233 248 0.86 2 5 0.069 4.2e+02 2.4 0.0 3 22 274 293 272 295 0.90 3 5 0.26 1.5e+03 0.6 0.0 3 22 337 356 336 358 0.90 4 5 1.3 7.6e+03 -1.7 0.0 3 15 381 393 380 395 0.86 5 5 3.8e-36 2.3e-32 112.2 0.0 3 78 421 496 419 497 0.97
Sequence Information
- Coding Sequence
- atgaccGAGATGGGCTTTGAGAACGTGTTTTACCTGGAAAGTGAGTGTTTGCCAGTTGTTTTTGTTGAGAGGGCTCAGAGGGACGGAGAGGTGTTGCCTGACTTTGAGTGCTGCGGCGACGAGGTGCTAGTGGAGTCGTCGCCGCCCGCCTCGCCTGTCATGGCGGCGCGGCTCGCCCAGCCCGCACAGggagcgggcgcgggcggcggcgggtcgCCGGCCGCCGTGCGGGAGCTCATCGTCATCCCCGAGATATCCAACACCATCAGTCTGCAGCACGCAATACAGCAGGTATCGAGCACGGTGGTTGAAGTGAACGGTGACAGTTCCGGCCACTCGAGCCCCACGACCGAGGCTCAACATACTTACATCACTGTGGCTATGCCGGACGAATGGCGGACCGACGGGTTGCCAGTCAAGGCTGAGATCCAGAGTGATGAAAGCGAGGGCAGCAATGGCGTCAACTATCACGTGCAGTATGTGGAGCCCCAAGAGATCTATACCCAAGGCCATGAAACTCATATGGAGACTCTCCGCTCGTACCCGGTGTACGGCGTGGCGACGGTCGCCGCGAGCGAGCCGCCGGCGTCGTCGTGGGGCGCGGACGAGTTCTCGTACAACGTGGTGGTGGGCGGCGACGACGCGCCCCcctcccccgcgcccgcgcccgccacgcCCCCGCAGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACAACTACGAGACCGCCGACGCCCGGGACCCCGGGACCCCGCTACCCCcctcccccgcgcccgcgcccgccacgcCCCCGCAGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACAACTACGAGACCGCCGACGGTGAGTCGCTAGCCCGGGACCCCGGGACCCCGCTACCCcctcccccgcgcccgcgcccgccacgcCCCCGCAGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACAACTACGAGACCGCCGACGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACAAATACGAGACCGCCGACGGTGAGTCGCTAGCCCGGGACCCCGGGACCCCGCTACCCCcctcccccgcgcccgcgcccgccacgcCCCCGCAGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACAACTACGAGACCGCCGACGCCCGGGACCCCGGGACCCCGCTACCCCcctcccccgcgcccgcgcccgccacgcCCCCGCAGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACAACTACGAGACCGCCGACGGCGTGTCGCTGCCCCGCTCCACGCTGTACGCGCACTACCTGCGCCACTGCGCCGCGCACCGGCTGGACCCGGTCAACGCGGCGTCCTTCGGCAAGCTCATACGGTCCGTGTTCGTGGGCCTGCGCACGCGCCGCCTCGGCACCCGCGGCAACTCCAAGTATCACTACTATGGGATACGCGCTAAGGCGGGACAGGGACAGCAGGAGAGTGAGAACATGGATGAGAAGGCTGATGTGCAGCATGATGATATGCAGGAGCCGCGAGACCGCGAGTCGGAACCGACGACGCCGACGGGCGGCGTGCCCGGCCTCGCCCACAGGCAGTATCTAGGCACAGggtctgcgccggcgccgcccgcgctgccgccggccgccgcgcacgagctgccgcccgccgcgctTACGGCTCTGCAGGACCATCACAGGTCGCACGGCGTGGAGTTTCTGGAGGCGGTGGCGGCGCTGGACATCGGCGCGGTGGAGCGCGCGCGGCGCAACTTCTGGCGGCGCCCGCCCGCCGCGCTCTgccgccgcctgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCcgccgcagctcacgcaggtactgctggcgcgcctggccgcgcggcgcgacgtggccgcctggctgcgccgcgccgacctGGAGCTGTACCAGCGCGCCGCGATCCGCAACTTCGCCAAGAGTTTGGAGTCTGCGCTGGCGTCCGGCTCGGGCTGCGCGCCCGCAGCGGCCGCGCGGGCCCAGgcctccgccgccgccgcgctcgccgccgcgctgcgccgctACACCAGCCTCAACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCGCCAACCAGCACCAGATACAGCAGATGCTGTCGGATCTGAACCGCGTGGACTTCAGGGTGGTGCGCGAGCAGGCCGCCTGGGCGTGCTCCTGCGGCAGTGCCGCTACCGCGCACCGCCTCGAGGCTGACTTCAAGGTATATACGCACCTACACCCATTGCACTACCTGTTGAATATGTTCATGGAAGACGTAATGAAACTACAAGATCCGGTACAAGACTGA
- Protein Sequence
- MTEMGFENVFYLESECLPVVFVERAQRDGEVLPDFECCGDEVLVESSPPASPVMAARLAQPAQGAGAGGGGSPAAVRELIVIPEISNTISLQHAIQQVSSTVVEVNGDSSGHSSPTTEAQHTYITVAMPDEWRTDGLPVKAEIQSDESEGSNGVNYHVQYVEPQEIYTQGHETHMETLRSYPVYGVATVAASEPPASSWGADEFSYNVVVGGDDAPPSPAPAPATPPQPRMPPATVQWLLDNYETADARDPGTPLPPSPAPAPATPPQPRMPPATVQWLLDNYETADGESLARDPGTPLPPPPRPRPPRPRSRACRPPPCSGCSTTTRPPTPRMPPATVQWLLDKYETADGESLARDPGTPLPPSPAPAPATPPQPRMPPATVQWLLDNYETADARDPGTPLPPSPAPAPATPPQPRMPPATVQWLLDNYETADGVSLPRSTLYAHYLRHCAAHRLDPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKAGQGQQESENMDEKADVQHDDMQEPRDRESEPTTPTGGVPGLAHRQYLGTGSAPAPPALPPAAAHELPPAALTALQDHHRSHGVEFLEAVAALDIGAVERARRNFWRRPPAALCRRLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQVLLARLAARRDVAAWLRRADLELYQRAAIRNFAKSLESALASGSGCAPAAAARAQASAAAALAAALRRYTSLNHLAQAARAVLANQHQIQQMLSDLNRVDFRVVREQAAWACSCGSAATAHRLEADFKVYTHLHPLHYLLNMFMEDVMKLQDPVQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -