Pcor022566.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- slc12a9
- Assembly
- GCA_949127965.1
- Location
- OX421874.1:8866315-8893176[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.42 1.2e+04 -2.8 0.0 13 29 23 39 13 42 0.83 2 15 0.00079 22 5.9 0.1 32 52 761 780 759 781 0.88 3 15 0.00076 22 5.9 0.1 32 52 831 850 828 851 0.89 4 15 0.00076 22 5.9 0.1 32 52 901 920 898 921 0.89 5 15 0.00076 22 5.9 0.1 32 52 971 990 968 991 0.89 6 15 0.00076 22 5.9 0.1 32 52 1041 1060 1038 1061 0.89 7 15 0.00076 22 5.9 0.1 32 52 1111 1130 1108 1131 0.89 8 15 0.00076 22 5.9 0.1 32 52 1181 1200 1178 1201 0.89 9 15 0.00076 22 5.9 0.1 32 52 1251 1270 1248 1271 0.89 10 15 0.00076 22 5.9 0.1 32 52 1321 1340 1318 1341 0.89 11 15 0.00076 22 5.9 0.1 32 52 1391 1410 1388 1411 0.89 12 15 0.00076 22 5.9 0.1 32 52 1461 1480 1458 1481 0.89 13 15 0.00076 22 5.9 0.1 32 52 1531 1550 1528 1551 0.89 14 15 0.00076 22 5.9 0.1 32 52 1601 1620 1598 1621 0.89 15 15 0.00076 22 5.9 0.1 32 52 1671 1690 1668 1691 0.89
Sequence Information
- Coding Sequence
- ATGGCTGAAACGTTGAACCCTCTGGCCCCGAGCACCAACTATGCCCCGGCACCACAGGGGCTGATCAGTAAACTACGGTCCCGGTTCGGACGGAGCCAGCCCTCCGGCAGACCTATTGGAGAGGGCTATGTGGAGTTCGGCGAGTTCCGAGCGGAGAGGCCCACCGTCAAAAAGGTGGGGACCTTCGCTGGCGTGTTTTGCCCCGTCGTGCTGTCCATGTTTAGCGCCCTCATCTTTATTCGAATGGGATATCTCGTCGGCAACGCTGGTCTCCTGGTGACCTTGGCGCAGTTTGGTCTGGCGTATCTAATAGTGGTGTTTACCGTTACGTCCATATGCGCCATATCTACCAACGGGGCGGTGGAAGGGGGAGGAGTGTACTTTATGATAAGTCGGACCCTGGGCCCGGAATTCGGCGGTGCTATTGGCACCCTATTCTTCTTCGCTAACGTGGTGTCGAGCGCCCTTTGCATCTCCGCGTGTACTGAAGCGTTGGTGGAGAATTTCGGACCTAATGGGTACCTCATAGCCGATGGACAGCCTGGCCTCCCGAATGGCTACTGGTATCGCTTCCTTTACCGCTCTATCCTCAACGCCATAGGAGTCGGAGTGTCTTTGGCGGGAGCATCTCTCTTCGCACGAACCAGTCTAGCCATATGGGTTACCATGCTGGTGTGCCTCAGCAGCGCGTTGCTGAGTTTCTTCATCACTCCCCCGGGCGAGTTCGAGCGTCCGGAAACAAACCATCTGAGCAACATGTCTTCTTTTAACTACACGGGTCTGAGCGGGGCGACGCTGGCGTCGAACTTGTACCCTCGGTATGAAAGGGACTACTCCACGGCGGACGGGGAAATGGTGGACTTCGCTTCGGTGTTTGGAGTGCTCTTCACCGGAGTCACGGGGGTCATGGCTGGTGCCAATATGAGTGGGGAACTAAAGAACCCGGCCAGCAGCATCCCCCGTGGCACACTCGCCGCTCTCCTGTTTACCGCAATATCGTACGTCGTACTGAGTGTGCTGACCGCCGCCACCTGTACCAGAGAACTACTCCAGAATAACTATGCGTATCTCCTGCCTATCAATATATGGCCGCCTTTTATAACTGTTGGTATGCTTATGGCTACGTTTTCTGCTGGATTGTCAAATTTGATAGGGGCGTCGAGAGTATTGGAAGCCTTGGCCAAAGACAATATTTATGGTTTCCTCCTCCGTCCGATGGTCTCCCGCTCTGGGAACCCGGTCCTAGCCGTCATAGCATCCTGGCTGCTGGTGCAGGTGGGCATCATCACCGGCTCCCTCAACGCCATCGCTCAGATCAACTCGGTGCTGTTCATGACGAGCTACTTCGCCATCAACCTCGCTTGCCTTGGGCTGGATCTGGCTGGAGCGCCTAATTTTAGGCCGTCGTTCAAGCAGTTCTCGTGGGCGACCTGTCTAGCGGGGCTGGCGGGCTGCGCGGGAGTGATGTTCTCGCTGCGGCCCGCGCACGCCAGCGGGGCGGCCGGCGCATGCGCGGTGCTCGTGCTGGCGCTGCACGCGCtgtcgcccgccgccgcgcagcccaGCTGGGGCAGCCTCTCGCAGGCGCTCATCTTCCACCAGGTGCGCAAGTACTTGCTGCTGCTGGACCCGCGGCGCGAGCACGTCAAGTTCTGGCGGCCGCAGATGCTGCTGCTGATCGCCAGCCCGCGCCAGCAGGCGCCGCTCATCGACTTCGTCAATGATCAGAAGAAGGGCGGTCTATTCGTGGTGGGTCACGTGAGAGTGGGCGAGCTGGACGGCAGCGGGGACCCGCTGGCCGACGAGCACAAGTACTGGCTCAAGCTGATCGACCACCTTAAGGTGAAAGCCTTCGTGGAGCTGTGCCTGGCGGAGTCTGTGCGCAGTGGCGCGGCGCACCTCACGCGGCTGTCCGGGCTGGGCGCCATGAAGCCGGACACGGTGCTGCTCGGCTTCCGGGACAACGCGCCGCCCAGGGACTTCTTCCGGGACCCCAACTCGCCGTACTTCACGGGCGAGTTCGACACGGAGGCGGGCGACGTGTTCccgctgcggcgcggcgcgcacgCGCTGCCGGCGCACGAGTACGTGCGCGTCGTGGCCGACGTGCTCAGCGTGCGCAAGAACGTGGGCCTCTGCCGGCACTACCACAAGCTGGACATGGCCGCCGTGGAGCGCAAGTCGCCGAGCCTGAAGTACATAGACGTGTGGCTGGTGGAGCCGCTGTCGCCGCGGCACGGCGCCTTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTCAGTACATAGCGCGCTCACGGTGCGCGCGCTGTTCGCGCTGCAGCTCAGCGCCGTGGTGCGctcggcgcgcggctggcggcacctgcgcctgcgcgtgtTCTGCAAGCCCGAGCCGGCCCGCAGCGGTATCTCGGAGGCGGGCAGGACGCTCCCGCTGGCGGACGAGCCGGCGCTGGACCCGGCCGTGCTGAGCCTGGCGCCCGGCGGCGCGCCCGACCTGCGCCTGGCGCGCCTGCTGACGCTGCTCAGGATCAACGCCACCGTGCACGTCGTATCAGAATGGCCAGCGCTGGAAGACAGTAGTCGATGGAGCACTGACAGCTCAGACAACAGCCTATACCAAAGAGTGCCTATTAGTTATTTGCAGAAAGTTAACCAAACGATAAAGAGCCGCAGCGGCGTCGAGACTGCCGTCACGTTTGTCCAGTTGCCGGAGCCGCCGAAGCTGACCGCGCACCTGTCGGATGAAGACAAAGTTGTGTGCGAAACCTACCTGCAGATATTAGACGAATTCACAAAGGATCTCTCGCCCACGATACTCGTGCGGGGACTCAAACCCGTCACCTCCACAGCTCTATAA
- Protein Sequence
- MAETLNPLAPSTNYAPAPQGLISKLRSRFGRSQPSGRPIGEGYVEFGEFRAERPTVKKVGTFAGVFCPVVLSMFSALIFIRMGYLVGNAGLLVTLAQFGLAYLIVVFTVTSICAISTNGAVEGGGVYFMISRTLGPEFGGAIGTLFFFANVVSSALCISACTEALVENFGPNGYLIADGQPGLPNGYWYRFLYRSILNAIGVGVSLAGASLFARTSLAIWVTMLVCLSSALLSFFITPPGEFERPETNHLSNMSSFNYTGLSGATLASNLYPRYERDYSTADGEMVDFASVFGVLFTGVTGVMAGANMSGELKNPASSIPRGTLAALLFTAISYVVLSVLTAATCTRELLQNNYAYLLPINIWPPFITVGMLMATFSAGLSNLIGASRVLEALAKDNIYGFLLRPMVSRSGNPVLAVIASWLLVQVGIITGSLNAIAQINSVLFMTSYFAINLACLGLDLAGAPNFRPSFKQFSWATCLAGLAGCAGVMFSLRPAHASGAAGACAVLVLALHALSPAAAQPSWGSLSQALIFHQVRKYLLLLDPRREHVKFWRPQMLLLIASPRQQAPLIDFVNDQKKGGLFVVGHVRVGELDGSGDPLADEHKYWLKLIDHLKVKAFVELCLAESVRSGAAHLTRLSGLGAMKPDTVLLGFRDNAPPRDFFRDPNSPYFTGEFDTEAGDVFPLRRGAHALPAHEYVRVVADVLSVRKNVGLCRHYHKLDMAAVERKSPSLKYIDVWLVEPLSPRHGAFTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSAQRRGALGARLAAPAPARVLQARAGPQRSVHSALTVRALFALQLSAVVRSARGWRHLRLRVFCKPEPARSGISEAGRTLPLADEPALDPAVLSLAPGGAPDLRLARLLTLLRINATVHVVSEWPALEDSSRWSTDSSDNSLYQRVPISYLQKVNQTIKSRSGVETAVTFVQLPEPPKLTAHLSDEDKVVCETYLQILDEFTKDLSPTILVRGLKPVTSTAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -