Basic Information

Insect: Pandemis corylana
Gene Symbol: -
Assembly: GCA_949127965.1
Location: OX421875.1:7269978-7274407[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.4 26 6.2 1.0 10 23 286 300 274 300 0.87

2 7 0.0011 0.073 14.2 1.9 2 23 372 393 371 393 0.96

3 7 0.67 44 5.5 0.3 1 23 397 419 397 419 0.93

4 7 0.00013 0.0085 17.1 0.7 1 23 424 447 424 447 0.94

5 7 0.0039 0.25 12.5 0.2 2 23 484 506 483 506 0.96

6 7 0.00015 0.0098 16.9 3.5 1 23 512 534 512 534 0.98

7 7 5.8e-05 0.0037 18.3 0.3 1 23 539 561 539 561 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.4	26	6.2	1.0	10	23	286	300	274	300	0.87
2	7	0.0011	0.073	14.2	1.9	2	23	372	393	371	393	0.96
3	7	0.67	44	5.5	0.3	1	23	397	419	397	419	0.93
4	7	0.00013	0.0085	17.1	0.7	1	23	424	447	424	447	0.94
5	7	0.0039	0.25	12.5	0.2	2	23	484	506	483	506	0.96
6	7	0.00015	0.0098	16.9	3.5	1	23	512	534	512	534	0.98
7	7	5.8e-05	0.0037	18.3	0.3	1	23	539	561	539	561	0.99

Sequence Information

Coding Sequence: ATGGATGTAGAAGACGGTAAATATTTTGGTATTTGCAAGTGTTGTCTTCGAGATGGGTGTTTTAGGAGTATGTGGGTTGAATATGAGGTCGATGGTCTCCTCCAAAATTATGGCGAAATGCTCAATGAATGCTTTGATTTGTGCTGGCATAAACCTGATAACAGTCACCTGGAGCAGATCTGCGATGCATGTGTGTCGCACACAAGGGACACCTACACATTCCGTCGCCTCATTCTCAAGAGTCAAGATCGTTTGAACGGAGTGGTCCAGCATAAGAATGATGTACTGGAAATAGAGTATAAGCCGAATACGGAATTGATTTACGCTGAGGATGTCTCGGAAGATTTATTATCATTGATAATGAAGACCGAGGCAACCGAGGTAAATTCTGATGACCATTCTCAAGATGAGAATCCCGTGTACTTGGAGGATGCCGAGCCGGAGGTCTTCGAGGAAGTGGAGTACCTGGAGGTGGAGAATGATAGTCAACCGCAGAATATAGAGGAGCACACAGACCCACCGGCTCAACGGAAATGGCCTAAGAAGAAGAAGCGGGGCGAGCGGCGCGCGTACAAGTGCTACACGATGGAAGACGTGCAGAGCGGCATGGCGGCCGTCCAGAGCGCCGCCATGAGCATGGCCGAGGCTGCCGCCGCCTACAACATACCGCGCAAGACGCTCGCAGCCAAGATACTCAGCGAAAAACGCGGCGaGATACCGAAAATAGGGGCCAACGGTCGCTACGTGAAGTTTATTAAGGAAATACAGACGCTCCTCACCTACACAAACATGATCCCGTACAAGACCAAGACGGCGCACCTGCACTGCGCCTACTGCTCCACGGTGGGGCCGCTGTTCGACGACGCCGACGAGCTGAGGAAGCACACGAGGACGCAGCATGCTGGCGACAGAACAAAAAGCGTGGAACAGTTCCTACGACCGCTATGGCTCAACGAAGTACTGAAAGTTGACATTGAAAATCTTCACTGCACCATCTGCTGCACCTACTTGCCGTCCTGGAACGACATGTTCAAACATCTCACAGAACAACATAACTTGGAGTTTGATGAAGCCTACACCAGAGTGATCCCTTACATCCTAAGCACCGACTGGAGATGTGCACTGTGCAAAGAATCCTTCCCAAATTACCACCACCTGGACAGCCATATGAACGCCCATTACAACAACTATATGTGCTCTGAATGTGGGGACACCTTCTTGGCTGAGACACGTTTGAAAAAGCACGTTCAGATCCACGATACAGGCAGATTTCAGTGCGAAGAGTGCGGGAAGACTTTCACACTAGAAAAGTACAGGACGAAGCATATCGAGTTGGTGCATAAGCAGAATCAGAAGATCAGGTGTCTCTATTGCACTGAGAAGTTCCATGGGACTTATCCGAGGCACTTGCACGTGTTAGCTAAGCATAAAGATAAGGTTAAGTTTATAACTTGTGAGTTGTGCGGTAAAACATTTGATTGGAGGCCGTATTACTTGGCCCATATAAGGAGGAAGCATGAGAATGAGAAGAAGTATCAGTGCCACTTTTGTGAGAAGCAGTTCTTCATGAAGTCTGAGCTTGTGAGGCATCAGATGGGGCATACGGGTGAGAAGTATAGTTGTGATGTGTGCGGGAAGAATTTTTCCAGTATGTGGGTACTTAACGGGCATTATAGGACCCATGGGCAGGAGAGGGCTAGGCCTAGGTTGAAGAAGGATTGA
Protein Sequence: MDVEDGKYFGICKCCLRDGCFRSMWVEYEVDGLLQNYGEMLNECFDLCWHKPDNSHLEQICDACVSHTRDTYTFRRLILKSQDRLNGVVQHKNDVLEIEYKPNTELIYAEDVSEDLLSLIMKTEATEVNSDDHSQDENPVYLEDAEPEVFEEVEYLEVENDSQPQNIEEHTDPPAQRKWPKKKKRGERRAYKCYTMEDVQSGMAAVQSAAMSMAEAAAAYNIPRKTLAAKILSEKRGEIPKIGANGRYVKFIKEIQTLLTYTNMIPYKTKTAHLHCAYCSTVGPLFDDADELRKHTRTQHAGDRTKSVEQFLRPLWLNEVLKVDIENLHCTICCTYLPSWNDMFKHLTEQHNLEFDEAYTRVIPYILSTDWRCALCKESFPNYHHLDSHMNAHYNNYMCSECGDTFLAETRLKKHVQIHDTGRFQCEECGKTFTLEKYRTKHIELVHKQNQKIRCLYCTEKFHGTYPRHLHVLAKHKDKVKFITCELCGKTFDWRPYYLAHIRRKHENEKKYQCHFCEKQFFMKSELVRHQMGHTGEKYSCDVCGKNFSSMWVLNGHYRTHGQERARPRLKKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01135700;
90% Identity: iTF_01135700;
80% Identity: iTF_01134736;