Basic Information

Insect: Pandemis corylana
Gene Symbol: -
Assembly: GCA_949127965.1
Location: OX421859.1:1999462-2006946[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.011 0.73 11.1 2.6 2 23 25 46 24 46 0.95

2 13 0.00014 0.0089 17.1 1.8 1 23 84 107 84 107 0.94

3 13 0.0029 0.19 12.9 0.9 1 23 109 131 109 131 0.97

4 13 0.058 3.8 8.8 0.0 1 23 165 187 165 187 0.96

5 13 1.1 72 4.8 0.4 2 23 222 244 221 244 0.86

6 13 0.041 2.7 9.3 1.2 1 14 279 292 279 297 0.88

7 13 0.0034 0.22 12.7 2.1 2 23 314 336 313 336 0.96

8 13 0.0047 0.31 12.2 0.2 3 23 343 366 341 366 0.93

9 13 0.79 51 5.2 0.9 3 23 374 394 374 394 0.97

10 13 0.027 1.8 9.8 0.1 1 20 399 418 399 421 0.93

11 13 0.38 25 6.2 1.2 1 23 427 449 427 449 0.96

12 13 0.00091 0.059 14.5 4.8 1 23 455 477 455 477 0.98

13 13 0.00066 0.043 14.9 1.9 1 23 483 506 483 506 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.011	0.73	11.1	2.6	2	23	25	46	24	46	0.95
2	13	0.00014	0.0089	17.1	1.8	1	23	84	107	84	107	0.94
3	13	0.0029	0.19	12.9	0.9	1	23	109	131	109	131	0.97
4	13	0.058	3.8	8.8	0.0	1	23	165	187	165	187	0.96
5	13	1.1	72	4.8	0.4	2	23	222	244	221	244	0.86
6	13	0.041	2.7	9.3	1.2	1	14	279	292	279	297	0.88
7	13	0.0034	0.22	12.7	2.1	2	23	314	336	313	336	0.96
8	13	0.0047	0.31	12.2	0.2	3	23	343	366	341	366	0.93
9	13	0.79	51	5.2	0.9	3	23	374	394	374	394	0.97
10	13	0.027	1.8	9.8	0.1	1	20	399	418	399	421	0.93
11	13	0.38	25	6.2	1.2	1	23	427	449	427	449	0.96
12	13	0.00091	0.059	14.5	4.8	1	23	455	477	455	477	0.98
13	13	0.00066	0.043	14.9	1.9	1	23	483	506	483	506	0.97

Sequence Information

Coding Sequence: ATGGCAACTCCATCGCCCTCGCCGGCGTTCGCCAACCTCAAGTTAACCACTATTGACTTAGTCGGTGGCATCTACTGCAGCCTTTGCCACTTGAcgtttagaaataaatatgAATACGATATACATTACTACAAGCACAATCTGGGGAAGGAGGAGATTGTGTACACATGCGTGGTATGCCACAAAGACATAGCGGGGTATCCGAAATTCCGCGGCCACTGCTATACCAAACATGTCATCAAGGACAGATTCAAaTGCAACCATTGCAGCAAACAATTTTCCAAAGTGTCAGCCCTGAATGATCACATCACTGCTATGCACAAATTCCAGTGCTCAAGCTGCCAAAGAGAattCCCAACAAAACGGGAGATGCAGTTGCACAAGATCATCCACATGAACGACAAGCCACCATTCCCGTGCCAGTCCTGTAACATGAAAGTGCACTCCGTTGATTCCTGCGAAGAGCACATCGACAAACACTCGCAGTCTATCTACACCTGCCCCATTTGCAACGAACGGGCGGAGAATAAAGCCGATGCCGTGGAACATCTCACTGTACACTTTGGCGAAGTACTTAACGATACAAACGATGATTCAGAGGAATCGGAAACAGAATGCTCTGATAAACCGGAAGACAGTTCTATAGATTTGATCGGTGGGATAGTCTGCGTTGTCTGTAAGACTATATTTAAGAACCGCGCTGAGATTGATTTGCATTTTAACCATGATCATCCGGAGAAGGAGGTTGTGTACAGCTGTAATATTTGCGCGGACACGTTCGAGAAGTACTATCTGTTTGGTCGGCACTGTTATGAGCATATCAATAAGAACAGATTCAAGTGCGAGTCGTGCGGGCGCACGTTCAGCCGGCTGGCGCGCCTGGTGTGCCACGCGGCGGCGTACAGCGGGcgctgcgcggcgggcggcggcaagCCGTGGCGCTGCCCGCGCTGCCACACCACGTTCGCCAGCGAGTACCGCTACCGCGACCACCAGCGCCAGGTGCACGGCATCTGCGTCATCATGTGCCCGCAGCCTGAATGCCAACTCACcttCGATACGCCCAAGGAGCTAATCCTCCACCACCAGTCGCAGCACGACACGTCTATGGAGCACTGGTGCCGCCTCTGCGGCCTCCAGTTCCATTCCCGCAACGCCGCTGAGAAACACCTCGACGTGCACAAAAAGAAGACCTTCGCCTGCCCCGTCTGCGCCAAAACCTACGGCGAGAAGTACCTACTCATGAAACACGTCCCCCAACACTTCGAGACGGTCATCCATGTATGCAGAGTGTGTGGAAACTTGTATAGCGCTAAAAGCAGACTCAAGGAACACTCCAAAGTACATGCGGAGGTCAAAGATTACCACTGCTCCTTCTGCAGCAAAGGATTTACGAGCGTGTACAAACTAAAGCAGCATCAAAACATGCACACGGGTCAGCGTCCGTACAAGTGCACTGCGTGCACGAAAACATTCACCAACTACCCCAATTGGTACAAGCATCTGTTGAAAATGCATAAGATTGATCCGAAAACGATAAAGAAATCGAATCCGAAACCGGAGGTCCCGGAGGATGACTCCGGTAGTAAAGAAAATGTTACTGTCAATACGGGTACTGTGCTTAAGACTGTTTCCGTTGAAATGAACGTAGACTTGGATATGATCTCGGAGGAAATTTACAATAGAGAAATAGAGAAGAATGCCGTAAGTGAAGAGATGAAAAGTGAAGAGCCCTATTTGTTTCTGGAGGCGGCTAATGAAGCTGTTGACTTGGACAGTATCAACCCATCTATCGCTCCTGGAAGTGTGACTGAGTTTGTGTTGGCCCCTTCTGCTACATTGGTTTCGGAGGCGCAACAATTCGAGCCAGTTGGCATCCCTCGGGAGTACGGCCCAGATTTCACGGTCGCTGACTGCGCCGGACGTCTCTTACACCTCGACGACCATATACTGCCCCACATCGACCCCCTCCTCACTATAAAGGACCAGCCCTACCAGCAATATGGGTACGTACTCGACCAGCCCAAACCTGACAAATGGGAGCCTCGAATAATAACCAAGTATCAGGATCCTTATGGATATGAGAACGACATCACCGCTAGCCGGCTGGCCGTCATGAATACAGATATATATTGA
Protein Sequence: MATPSPSPAFANLKLTTIDLVGGIYCSLCHLTFRNKYEYDIHYYKHNLGKEEIVYTCVVCHKDIAGYPKFRGHCYTKHVIKDRFKCNHCSKQFSKVSALNDHITAMHKFQCSSCQREFPTKREMQLHKIIHMNDKPPFPCQSCNMKVHSVDSCEEHIDKHSQSIYTCPICNERAENKADAVEHLTVHFGEVLNDTNDDSEESETECSDKPEDSSIDLIGGIVCVVCKTIFKNRAEIDLHFNHDHPEKEVVYSCNICADTFEKYYLFGRHCYEHINKNRFKCESCGRTFSRLARLVCHAAAYSGRCAAGGGKPWRCPRCHTTFASEYRYRDHQRQVHGICVIMCPQPECQLTFDTPKELILHHQSQHDTSMEHWCRLCGLQFHSRNAAEKHLDVHKKKTFACPVCAKTYGEKYLLMKHVPQHFETVIHVCRVCGNLYSAKSRLKEHSKVHAEVKDYHCSFCSKGFTSVYKLKQHQNMHTGQRPYKCTACTKTFTNYPNWYKHLLKMHKIDPKTIKKSNPKPEVPEDDSGSKENVTVNTGTVLKTVSVEMNVDLDMISEEIYNREIEKNAVSEEMKSEEPYLFLEAANEAVDLDSINPSIAPGSVTEFVLAPSATLVSEAQQFEPVGIPREYGPDFTVADCAGRLLHLDDHILPHIDPLLTIKDQPYQQYGYVLDQPKPDKWEPRIITKYQDPYGYENDITASRLAVMNTDIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00156589;
90% Identity: iTF_01136266;
80% Identity: -