Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387351.1:20830642-20842654[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.025 1.8 9.9 3.9 2 23 25 46 24 46 0.95

2 14 0.00011 0.0082 17.3 0.4 1 23 84 107 84 107 0.96

3 14 5.9e-05 0.0043 18.2 0.2 1 23 109 131 109 131 0.94

4 14 0.14 10 7.6 0.0 1 23 165 187 165 187 0.95

5 14 2.3 1.7e+02 3.8 0.8 3 23 222 243 220 243 0.86

6 14 0.78 57 5.2 3.0 1 19 250 268 250 272 0.91

7 14 0.012 0.84 11.0 0.1 1 19 278 296 278 298 0.94

8 14 0.0013 0.098 13.9 0.6 2 23 315 337 315 337 0.96

9 14 0.034 2.5 9.5 0.2 3 23 344 367 342 367 0.91

10 14 0.48 35 5.9 0.5 3 23 375 395 375 395 0.97

11 14 0.024 1.8 10.0 0.1 1 20 400 419 400 422 0.93

12 14 0.047 3.4 9.1 2.4 1 23 428 450 428 450 0.96

13 14 2.7e-05 0.002 19.3 3.9 1 23 456 478 456 478 0.98

14 14 0.0011 0.077 14.3 2.9 1 23 484 507 484 507 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.025	1.8	9.9	3.9	2	23	25	46	24	46	0.95
2	14	0.00011	0.0082	17.3	0.4	1	23	84	107	84	107	0.96
3	14	5.9e-05	0.0043	18.2	0.2	1	23	109	131	109	131	0.94
4	14	0.14	10	7.6	0.0	1	23	165	187	165	187	0.95
5	14	2.3	1.7e+02	3.8	0.8	3	23	222	243	220	243	0.86
6	14	0.78	57	5.2	3.0	1	19	250	268	250	272	0.91
7	14	0.012	0.84	11.0	0.1	1	19	278	296	278	298	0.94
8	14	0.0013	0.098	13.9	0.6	2	23	315	337	315	337	0.96
9	14	0.034	2.5	9.5	0.2	3	23	344	367	342	367	0.91
10	14	0.48	35	5.9	0.5	3	23	375	395	375	395	0.97
11	14	0.024	1.8	10.0	0.1	1	20	400	419	400	422	0.93
12	14	0.047	3.4	9.1	2.4	1	23	428	450	428	450	0.96
13	14	2.7e-05	0.002	19.3	3.9	1	23	456	478	456	478	0.98
14	14	0.0011	0.077	14.3	2.9	1	23	484	507	484	507	0.97

Sequence Information

Coding Sequence: ATGGCATCCCCGTCGCCGTCACAGGCGCCCTTCGACCTCAAGTTAACCACTATTGACTTAGTCGGTGGCATCTACTGCAGCCTTTGCCACCTGACGTTTAGAAATAAAAAAGATTATGACACTCACTACTATAAGCACAATCTGGGGAAGGAGGAGATTGTGTACACATGCGTTGTATGCAACAAGGACATTGCTGGGTACCCGAGCTTCCGCGGCCACTGCTATACCATTCATGTAATTAAAGACAGATTCAAATGCAATTATTGCAGCAAACTATTTTCCAAAGTGTCAGCCCTGAATGATCACATCAACGCTATACACAAGTTTCTGTGCCCGATCTGCCAAAAAGAATTCCCAACCAAACGGGAGCTGCAATTGCACAAAATAATCCACATGAAGGACAAGCCACCGTTCCCGTGCCAGTCCTGCAACGAGAAAGTTCACTGTGCAGACGCCTGCGAGGAGCATATCGACAAACACTCCCAGTCTATCTACACCTGCCCAATTTGCAACGAGCAGGCAGAAAACAAAGCTGATGCGGTAGAACATCTCACCATACACTTTGACGACGTACTTAACAATACAAACGATGATTCCGAAGAATCAGAAACTGAATCTGATAAACCAGAAGACAGTTCCATAGATTTGATTGGTGGGATTTTCTGTGTTGTCTGTAAGACGATTTTCAAGAACCGAGCTGAGATTGATTTGCATTTCAACCATGATCACCCGGAGAAGGAGGTTGTGTACAGCTGTAATATTTGTGGGAGCATGTTCGAGAAGTACTATCTGTTTGGTCGGCATTGTTACGAACACATCAATAAGGATCGGTTCAAATGCGAGTCATGCGAGCGCACATTCAGCCGGCTGGCGCGCCTAGTGTCGCACGCGGCGGCGTTCGGCGGCGCGTGCGGCGCGGCCGGCGCGCTCGGCAAGCCGCGCCGCTGCCCGCGCTGCGACACCACGTTCGCCAGTGAATACCGGTACCGCGAGCACCAGCGGCTCGCTCATGGGATCCGCGTCATCATGTGCTCGGAGCCCGGCTGCGGAGACACCTTTGAAACTCCAAAGGAGCTGATCCTCCACCACCAAAAGCAGCACGACGCCTCCATGGAGCGCTGGTGCCGCCTGTGCGGCCTCCAGTTCCACTCCCGCGCCGCCGCCGAAAAGCATCTCGACGTGCACAAGAAGAAAAAATTCGCCTGCCCCGTCTGCGCCAAAAGCTACGGCGAAAAATACCTACTTATGAAACACGTCCCGCAACATTTCGAAACCGTCATCCACATGTGCAAAGTCTGCGGTAACCTCTACAACTCAAAAAGCCGACTCAAAGAACACTCAAAGGTACACGCGGACGTCAAAAATTACAACTGCTCGTACTGCGGCAAGGGATTCACCACCATTTACAAACTCAAGCAGCACCATAACATGCACACAGGCCAGCGACCCTACGAGTGTACGGCTTGCACCAAAACATTCGGTAATTACTCCAATTGGTGCAAGCATCTGTTGAAAATGCACAAGATTGATCCGAAAACGATAAAGAAACCGATTCCGAAACCGGAGGATGGTAACGCCAGTAGTAAAGAAAACGTGACTAACAACACAAGTGCCGGCACGCTTAAGACTGTTTCTATTGAAATGGATATTGTAGCCGACTTGGAAATGATCGCAGAGGAGCTTAATGATAAAGTGATACAAGAGAATGCGTTGGTGAACGAGGAGATGAGGGAATCCTATATGTTTCTGGAGTCGGACAACGAAGCCGTTGATTTGGACAGCATCAACCCGTCTATCGCGCCCGGCAGTGTCGCCGAGTTTGTGTTGGCGCCTTCGGCTACTTTAGTTTCGGAACCTCAGCAATTGGAGGCAGTCGGCATCCCTCGCGAGTACGGCCCCGACTTCACCGTCGCGGACTGCGCGGGCCGTCTCTTGCACCTCGACGATCACATCCTCCCCCACATCGACCCTTTGCTCACCATCAAGGACCAGCCCCAGTACGGGTATGTACTCGACCAGCCGCAGCCAAGCAAGTGGGAGCCGCGAATCATCACCAAGTACCAGGACCCGTATGGCTACGACAGCGACATCAGCGCTAGCCGGCTCGCCGTCATGAATACAGATATATTTTGa
Protein Sequence: MASPSPSQAPFDLKLTTIDLVGGIYCSLCHLTFRNKKDYDTHYYKHNLGKEEIVYTCVVCNKDIAGYPSFRGHCYTIHVIKDRFKCNYCSKLFSKVSALNDHINAIHKFLCPICQKEFPTKRELQLHKIIHMKDKPPFPCQSCNEKVHCADACEEHIDKHSQSIYTCPICNEQAENKADAVEHLTIHFDDVLNNTNDDSEESETESDKPEDSSIDLIGGIFCVVCKTIFKNRAEIDLHFNHDHPEKEVVYSCNICGSMFEKYYLFGRHCYEHINKDRFKCESCERTFSRLARLVSHAAAFGGACGAAGALGKPRRCPRCDTTFASEYRYREHQRLAHGIRVIMCSEPGCGDTFETPKELILHHQKQHDASMERWCRLCGLQFHSRAAAEKHLDVHKKKKFACPVCAKSYGEKYLLMKHVPQHFETVIHMCKVCGNLYNSKSRLKEHSKVHADVKNYNCSYCGKGFTTIYKLKQHHNMHTGQRPYECTACTKTFGNYSNWCKHLLKMHKIDPKTIKKPIPKPEDGNASSKENVTNNTSAGTLKTVSIEMDIVADLEMIAEELNDKVIQENALVNEEMRESYMFLESDNEAVDLDSINPSIAPGSVAEFVLAPSATLVSEPQQLEAVGIPREYGPDFTVADCAGRLLHLDDHILPHIDPLLTIKDQPQYGYVLDQPQPSKWEPRIITKYQDPYGYDSDISASRLAVMNTDIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00155629; iTF_01136266; iTF_01135266; iTF_00342603; iTF_00325788;
90% Identity: iTF_00155629;
80% Identity: -