Pcor023498.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421875.1:7422882-7425568[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.035 2.2 9.5 1.2 1 23 50 72 50 72 0.97 2 19 1.1 70 4.8 0.2 2 23 100 122 99 122 0.93 3 19 0.061 4 8.7 5.0 1 21 145 165 145 167 0.95 4 19 0.055 3.6 8.9 0.2 2 23 172 193 171 193 0.96 5 19 6.1e-05 0.004 18.2 0.8 1 23 198 221 198 221 0.96 6 19 0.027 1.7 9.9 1.5 2 23 231 253 230 253 0.93 7 19 0.0086 0.56 11.4 2.4 1 23 259 282 259 282 0.95 8 19 5.8e-06 0.00037 21.4 3.1 1 23 286 308 286 308 0.98 9 19 9.5e-05 0.0062 17.6 2.4 1 23 314 336 314 336 0.98 10 19 0.0097 0.63 11.3 2.2 1 23 342 365 342 365 0.96 11 19 0.039 2.6 9.3 1.0 2 23 459 481 458 481 0.95 12 19 0.19 12 7.2 4.3 1 21 504 524 504 526 0.95 13 19 0.058 3.8 8.8 0.7 2 23 531 552 530 552 0.96 14 19 5e-05 0.0033 18.4 3.0 1 23 557 580 557 580 0.95 15 19 0.019 1.2 10.4 1.8 2 23 590 612 589 612 0.94 16 19 0.031 2 9.7 3.1 1 23 618 641 618 641 0.95 17 19 1.5e-05 0.00098 20.1 3.3 1 23 645 667 645 667 0.98 18 19 9.5e-05 0.0062 17.6 2.4 1 23 673 695 673 695 0.98 19 19 0.017 1.1 10.5 1.7 1 23 701 724 701 724 0.94
Sequence Information
- Coding Sequence
- ATGAAACTTACAGTATCTTTTTCTTCCACAGACGATAGACCAAGCATTAAAACAAGCGTGTGGCAAATGACGCTGCCAGAAAGGAAAAACGCGGCTGCTTTCATTCAGTACACGACCGTCAGACCGTTCATTTTCATGGGAACCTGTTTCAAATGTTTCTACTGCGCCGAATACTTCTCTAAACTAGCATCTCTATTAGATCACACCAGCAACCACGAAATACCAGAAGAAAGCGTGCTCTTAGAAAAATACGTTCACAAAGAAAAAAGAGTGCTTCAAGTTGACATATCGGATTTAAGCTGTCGTTTATGCAGTCGTAAATACCCCGATTTACAAGCAATTAAGGAACACCTACTAAATGATCACGATAAAGAATTCTTTCCAGCTAGCAACGGGATGACTGAGTACAACATGGAACTGAAAAACGGTGCTTTCGTCTGTCATATTTGTGACGGTGATTTCCACACATTCTCACTTCTGAATACACATATGAATTGCCATGTCGGTAAAGTGGTGTGCGAAACTTGCGGTGCTGGttttcttaataaatattttcttttaaaacatAAGGAAACGCATCTTAATAATAAGTTCAATTGTAAGGATTGTGACGCTGTATTCGGGAAGAAGAGTCAACTGAAGTATCACACAAAAATAGTCCACAAAGGACAGGCTAGAGTGAAGCCTAAGAAGTGTCCTCAGTGCGACGAAACGTTTAAAGAACATTACAGCAAAGTAATCCATTTAAAAGACGTGCATGGAGTATCACAAACTTTCGAGTGTCATATTTGCAAAGCGAAATTCACGTCTCGATGGGCGATCACACAACACACAACAAGATACCATACAGAGAAATACAAGTGCGAAATATGTTCAAAGTGCTTTAGTATAGAGTCCAAGTTGAAGCAGCATATGCGTGGTCACACAGGGGAACGGAACTTTGTATGTCCGATTTGCAAGAATGCGTACATGCACAAGATGACGCTTCGCAAACACATGCGGAGTCACAATTCTGTGTTTAAGTTCATGTGCTCCGAATGTGGATCtggatttcataataaaaacgAATTCGTTAAGCATACGAAACAGTGGCATATTGGATCCCGCGAGAATTCAGGCTTGGAAACTAGCATCTGGCAAATGACAGTTCCCGAACGAAAGAACGCAGCATCCTTCATAATGTTCACCACAGTTCGGCCTTTCATATTCATGGGCTCGAGTTTCAAATGCTTTTACTGCATGGAGTACCATTCAGAACTACCAGCGTTATTAGATCACACTTCAGCACATGAAATAAAGGAAAGCTTGAAGGTTATACTAGAGAAATACGTGCACAAAGGCAAAAGAACCCTGCAAGtagacatatcaaatttaaaatgcaaactTTGCAATCAAAGATACTTCAATTTAGATACTGTGCGAGAGCATTTGAAGTTAGAGCATAAGAAGGAGTTCTTTAACGCGACCAACGGCATGACGGAATACAACATGGCGTTAAGAAACGGTGCCTTTGTCTGTCACATATGCGGGAGTGACTTCCACTCATTTCCGCTTCTCAATTCACACATGAATTGCCACGTGGGTAAAGTCGTCTGTGAGACTTGTGGCGCCGGATTTCTAAATCAACATTTCTTAATGAAACACAAAGAAACACActataacataaaatttaactGCAAGCATTGCGACTTGGTGTTCACGAAAAAAAGCCAGTTGAAATACCACACAGAGATTATACATAAAGGCAAGGCTAGAGTGAAGCCAAAGAAATGCCCGCAGTGCGATGAAACTTTCAAGGAGCATTACAGCAAAATGATACATCTGAAAGACGTTCATGGAATCACCAAGACGTTCCCCTGCCATTTGTGCAAAGCTACATTTAACACTCGTAGAGCCATAACGCAGCACACTACAAGGTTTCATACCGAGAAATTTAAATGCGAAGTTTGCTCAAAGTGTTTCAGTATAGAGTCTAAGTTAAAGCAGCATATGCGTGGTCACACAGGGGAACGGAATTTTGTATGTCCGATTTGCAAGAATGCGTACATGCACAAGATGACGCTTCGCAAACACATGCGGAGTCACAATTCTGTGTTCAAGTTCGTTTGTTCGGAGTGTGGGTCAGGATTCCATAATAAGAATGAATTTGTGAAGCACTCGAAGCAGTGGCATGCTACATACAGTGAAATTACGTAG
- Protein Sequence
- MKLTVSFSSTDDRPSIKTSVWQMTLPERKNAAAFIQYTTVRPFIFMGTCFKCFYCAEYFSKLASLLDHTSNHEIPEESVLLEKYVHKEKRVLQVDISDLSCRLCSRKYPDLQAIKEHLLNDHDKEFFPASNGMTEYNMELKNGAFVCHICDGDFHTFSLLNTHMNCHVGKVVCETCGAGFLNKYFLLKHKETHLNNKFNCKDCDAVFGKKSQLKYHTKIVHKGQARVKPKKCPQCDETFKEHYSKVIHLKDVHGVSQTFECHICKAKFTSRWAITQHTTRYHTEKYKCEICSKCFSIESKLKQHMRGHTGERNFVCPICKNAYMHKMTLRKHMRSHNSVFKFMCSECGSGFHNKNEFVKHTKQWHIGSRENSGLETSIWQMTVPERKNAASFIMFTTVRPFIFMGSSFKCFYCMEYHSELPALLDHTSAHEIKESLKVILEKYVHKGKRTLQVDISNLKCKLCNQRYFNLDTVREHLKLEHKKEFFNATNGMTEYNMALRNGAFVCHICGSDFHSFPLLNSHMNCHVGKVVCETCGAGFLNQHFLMKHKETHYNIKFNCKHCDLVFTKKSQLKYHTEIIHKGKARVKPKKCPQCDETFKEHYSKMIHLKDVHGITKTFPCHLCKATFNTRRAITQHTTRFHTEKFKCEVCSKCFSIESKLKQHMRGHTGERNFVCPICKNAYMHKMTLRKHMRSHNSVFKFVCSECGSGFHNKNEFVKHSKQWHATYSEIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00023047;
- 90% Identity
- iTF_00023047;
- 80% Identity
- -