Acni023361.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- -
- Assembly
- GCA_963971205.1
- Location
- OZ020298.1:2926985-2929586[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.071 4.8 8.5 1.1 1 23 45 67 45 67 0.97 2 18 6 4.1e+02 2.4 2.8 2 23 95 117 94 117 0.93 3 18 0.018 1.2 10.3 6.4 1 21 140 160 140 162 0.95 4 18 0.051 3.5 8.9 0.2 2 23 167 188 166 188 0.96 5 18 5.7e-05 0.0039 18.2 0.8 1 23 193 216 193 216 0.96 6 18 0.069 4.7 8.5 1.0 2 23 226 248 225 248 0.93 7 18 0.022 1.5 10.0 1.2 1 23 254 277 254 277 0.95 8 18 5.3e-06 0.00036 21.4 3.1 1 23 281 303 281 303 0.98 9 18 0.00016 0.011 16.8 2.4 1 23 309 331 309 331 0.98 10 18 0.0049 0.33 12.1 1.8 1 23 337 360 337 360 0.96 11 18 0.13 8.8 7.6 4.4 1 21 498 518 498 520 0.95 12 18 0.046 3.2 9.0 0.7 2 23 525 546 524 546 0.96 13 18 3e-05 0.0021 19.0 1.7 1 23 551 574 551 574 0.95 14 18 0.017 1.2 10.4 1.8 2 23 584 606 583 606 0.94 15 18 0.014 0.97 10.6 3.2 1 23 612 635 612 635 0.95 16 18 7.9e-06 0.00054 20.9 3.3 1 23 639 661 639 661 0.98 17 18 0.00016 0.011 16.8 2.4 1 23 667 689 667 689 0.98 18 18 0.0034 0.23 12.6 1.7 1 23 695 718 695 718 0.96
Sequence Information
- Coding Sequence
- ATGACCAAGAACCAATACGATAGACCAAGCATTAAAACAAGCGTATGGCAAATGACGCTGCCCGAAAGAAAAAACGCTGCAGCTTTCATACAAAACACCACAGTCAGACCCTTCATTTTCATGGGAACCTGTTTTAAATGTTTCTACTGCGCAGAATATTTCTCGAAGCTACCATCCTTGCTAGAACATACGAGTAACCACGAAATTCCAGAAGAGAGTGTGCTTTTAGAAAAATATGTCCATAAGGAGAAACGTGTGCTACAAGTAGATATATCGGACCTGAACTGTCGTCTGTGTGGTTGTAAATGTCCTGATTTACAAACTATTAAAGAACATTTACAAAACGATCATGGAAAGGAATTCTTCCCAGCTAGCAACGGAATGACTGAGTACAATATGGAACTAAAGAATGGCGCTTTCGTTTGCCATCTTTGCGACAGAGATTTTCACACATTCTCTCTTCTAAATTCACACATGAACTGCCATGTTGGTAAAGTGGTCTGTGAGACATGCGGAGCCGGCTTCCTTAATAAATATTTCCTCTTAAAACATAAGGAAACGCACCTTAACATCAAGTTTAATTGTAAAGACTGTGACGCAGTTTTCGGAAAGAAGAGCCAACTCAAATATCACACCAAAATTGTCCATAAAGGACAAGCCAGAGTAAAGCCTAAGAAATGTCCACAGTGCGATGAGATATTTAAGGAACATTACAGTAAAGTAATACATCTGAAAGATGTTCACGGTATTTCACAAACTTTCGAGTGTTATATATGCAAAGCGAAATTCACATCCCGGTGGGCAATCACGCAACACACCACTCGGTATCATACAGAAAAATACAAGTGTGAAATATGCTCGAAATGTTTTAGCATAGAATCAAAGTTGAAGCAGCATATGCGCGGACACACGGGCGAACGGAACTTCATATGCCCGATCTGCAAGAACGCATACATGCATAAAATGACGCTTCGCAAGCATATGCGGAGTCACAATTCAGTTTACAAGTTCGTGTGTTCAGAGTGCGGATCGGGATtccataataaaaatgaatttgtgAAACACACGAAGCAATGGCACACGACGGGAGAAAATTCAGGCTTAGAGACAAGTATCTGGCAAATGACAGTTCCGGAAAGAAAGAACGCAGCTTCCTTCATAATGTACACAACAGTGCGCCCTTTCATCTTCATGGGCTCCAGTTTCAAATGCTTTTATTGCATGGAGTATCACTCGGAACTATCTACCTTACTACAGCACACCTCAGAACATCAAATCCAAGATAAccttaaatttattttagaaaaatacGTCCATAAAGGTAAACGGACGCTCCAAGTGGACATATCTCAATTGAAATGCAGGTTGTGCGATGAAAGGTGCCTCAATCTCGATGGCATTAGAGAACACCTAATGTTAGAACATAAAAAGGAGTTCTTTCCCGCTACCAACGGCATGACGGAATACAACATGGAATTGAGGAATGGTGTATTTGTATGTCACATATGCGGTAGCGACTTCCACACTTTCCCACTATTAAATTCACATATGAACTGCCATGTGGGAAAGGTAGTTTGCGAGAACTGTGGAGCGGGATTTTTGAATCAGCATTTCTTAATGAAACATAAAGAAactcattttaatattaaattcaaCTGCAAGCAATGTGATACCGTGTTTACAAAGAAGAGCCAGTTGAAGTATCACACCGAGATCGTCCATAAAGGCAAAGCTAGGGTCAAACCAAAGAAATGTCCCCAATGTGACGAGACCTTCAAAGAACATTATAGCAAAATGATTCATCTGAAAGACGTCCATGGCATCATGAAGACATTCCCCTGCCATTTGTGCAAAGCGACGTTCACCACTAGAAGAGCTATAACGCAACACACTACTAGATTTCACACGGAGAAATTTAAATGTGAGATATGCTCGAAATGTTTTAGCATAGAGTCAAAGTTGAAGCAGCACATGCGCGGACACACGGGTGAACGGAACTTCATATGCCCGATCTGCAAGAACGCATACATGCATAAAATGACGCTTCGCAAGCATATGCGGAGTCACAATTCGGTTTTCAAATACGTGTGTTCGGAGTGCGGATCGGGATTtcacaataaaaatgaatttgtgAAACACACGAAGCAGTGGCACGCTTCATATAAAGAGATGGTCACGTGA
- Protein Sequence
- MTKNQYDRPSIKTSVWQMTLPERKNAAAFIQNTTVRPFIFMGTCFKCFYCAEYFSKLPSLLEHTSNHEIPEESVLLEKYVHKEKRVLQVDISDLNCRLCGCKCPDLQTIKEHLQNDHGKEFFPASNGMTEYNMELKNGAFVCHLCDRDFHTFSLLNSHMNCHVGKVVCETCGAGFLNKYFLLKHKETHLNIKFNCKDCDAVFGKKSQLKYHTKIVHKGQARVKPKKCPQCDEIFKEHYSKVIHLKDVHGISQTFECYICKAKFTSRWAITQHTTRYHTEKYKCEICSKCFSIESKLKQHMRGHTGERNFICPICKNAYMHKMTLRKHMRSHNSVYKFVCSECGSGFHNKNEFVKHTKQWHTTGENSGLETSIWQMTVPERKNAASFIMYTTVRPFIFMGSSFKCFYCMEYHSELSTLLQHTSEHQIQDNLKFILEKYVHKGKRTLQVDISQLKCRLCDERCLNLDGIREHLMLEHKKEFFPATNGMTEYNMELRNGVFVCHICGSDFHTFPLLNSHMNCHVGKVVCENCGAGFLNQHFLMKHKETHFNIKFNCKQCDTVFTKKSQLKYHTEIVHKGKARVKPKKCPQCDETFKEHYSKMIHLKDVHGIMKTFPCHLCKATFTTRRAITQHTTRFHTEKFKCEICSKCFSIESKLKQHMRGHTGERNFICPICKNAYMHKMTLRKHMRSHNSVFKYVCSECGSGFHNKNEFVKHTKQWHASYKEMVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01135064;
- 90% Identity
- iTF_01135064;
- 80% Identity
- -