Pcor022784.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421875.1:1486731-1511759[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.2 78 4.7 0.1 1 23 119 141 119 141 0.92 2 14 0.00057 0.037 15.1 2.2 1 23 275 297 275 297 0.99 3 14 2.6e-05 0.0017 19.4 0.5 1 23 303 326 303 326 0.97 4 14 0.0014 0.088 13.9 3.7 1 23 331 354 331 354 0.94 5 14 1.4e-05 0.00089 20.2 0.5 2 23 519 540 518 540 0.97 6 14 7e-05 0.0045 18.0 2.3 1 23 546 568 546 568 0.99 7 14 2.4 1.6e+02 3.7 0.0 2 23 656 677 655 677 0.95 8 14 0.0048 0.31 12.2 1.6 1 23 683 705 683 705 0.95 9 14 0.00023 0.015 16.4 1.1 1 23 711 733 711 733 0.97 10 14 0.00073 0.047 14.8 2.1 1 23 742 764 742 764 0.98 11 14 0.00017 0.011 16.8 0.6 2 23 811 832 811 832 0.97 12 14 0.025 1.6 10.0 6.3 1 23 849 871 849 871 0.96 13 14 1.5e-06 0.0001 23.2 0.7 1 23 877 899 877 899 0.98 14 14 7.2e-07 4.6e-05 24.3 3.1 1 23 905 928 905 928 0.98
Sequence Information
- Coding Sequence
- ATGGATCCGAACATGGCAACCGAAATAGATCCTTTGAGCATGTACGAATACCCATCCTTCAATTACCACCAGCTCCATTATAGCTATCCTTACGATGTGAAACTAGAACAACCCAATTATGTGAACAACAATGTTGCTTTGAACCATCCTAATGTACCACTGGCCAACGATCCACCACAGAATGTACCGCAGACAATCGAGAATGAAGCACGGCCGTCTAACGGTCACGCAACAGATGGAGAAACCAAGGATACAGACGTCAAACCTGTGTTCGATTTGGGTAAAGTCAAGAAGGAGACAGGAAAGAAGAGCAATTACTGGTCCCAGAAAATAACGGATGAGAATTTTCCGTTTTACGCTTGCGCTCTCTGCAATGTCAGTTATAAGCTGCTCCGCGATTTGGATTCGCATTTGGTTGATCACAAGGAACGTTTGACTAGCTACGACTTGCGGATGAAGAGCAagttaaaaaagaaacagttgAAGAAGGAGCAGAGGAAGTTGAAGAAGTTGTCTAAAGAGGTGAAGCTGGAAGTGGAGATTAAGCCGGAGGACGGGTACATTGGTAACGAGAAAGCAGAGGACTTTATAAATAATTCTAAAGTTAACGAAACTGTGAATAGTGATAATACGCTGAGTAAAGATATAGTTGATAAGGTGACGGAGAAAGTGCAGGAGATCTTAAATAATGCTGGTACTAGTGAAGGTGTAAATAATGAAACGAGTAATAATAAGGTGGTGGACAATGTGGATGCTGTTAAACATGGAGAAACGAAGGTTGGAGAAAAGGAGGTTGAATACAATAAGGATTTGGAGAAGATTTACAAGTGTTCCGCTTGCCAGAAACAGTTCTCGTTAAGTTATTATTTGAAGCTACATGTCAGATCTCATACAGACGAGAAACCGTACACTTGTAGCGAATGTGGGCAGTCGTTCATCACGGCCAGCAAGCTCGGCCGGCACAACAAGAGAATACATCTCGCCATCAAGTACCAGTGCCGGATATGCTATAAGATATTCACCAGATTCGAATACCTGACACGGCATTTCGACAAAAAGCACGCAGAGGATAAATTGGAAGGAGAGCCGTATGatTATAATGCAATTCTGCCGTATCTCAAGGAGTTGGAGGAGCAGCTCCGCGAGAAGGCCGAGAAGGAGGCGAAGCCGAAGACAGAAGCCCTGTGGGACGACTGGCCCGAGGTGGATGGGGCGCACTTCCTGCAGCCAGACCCTCAGCTCTCGGAGGACAAGAAGCAATTTGACACACACGTCATCAACCATCTGGATATAGTCATGGAGGATGTCAAGGTGCCTGTGGAACAGATGGAAACGCCAGAAGTGGAGGTGAAGGTTGAAGTGGAGGAGCAGCGCGACGACGGCGACGACGGCGACGACCGACGCAGCGACGCCGGCGACCGCGACGACTTCAAGGACGAGAGCATGTCAGACGAGGACTACTTCCCGTCGAACACGTGGGCGGAGCCGCCCAAGATGGAGCCCTGCCCGCAGTCGCCGCCGCGCGGGCGCCGGCCGCGGCCCGCCGGCGCGCTCACCTGCAAGACCTGCGGCAAGGCCATCAGCACCGCCTCGTACATGCGCATACACATGCGCACGCACACCGGCGAGAAGCCCTACAAGTGCTACGTGTGCGGGCGCGGGTTCATCACCTCCAGCAAGATGCACCGGCACGTGCTCACGCACTCGGAGACCTGGGAGAAAGACGGCGCCGGTGTCAAAGTGGAAGGCGCCGACGTGAAGGAGGAGGACGACCCAGAAGAGGGAGAGGGGAAAGAGGGAGACGGCAAGAAAGCGTCAAAGAAGCCGCGCAAGAAGCGCGTCGAGAAGAAGAAACGGGACTATCAGAAGCGGCCGCACGCCTGCGAGTTCTGCCAGAAGCGGTTCCTCCACCTCGAGATGCTGCAGGTGCACAAGAAGTGCCACGACGGCGAGAGCGCGGTCCTCAAGTGCTATTACTGCCTCGAGGATGTCGTAGACGAGGCGGGGCTTAAAGAGCACGAGGCGACGCACACGGGAGCGAAACCGTTTTTATGCACGCTCTGCGGGAAAGGGTACAAGAGGAGAGAGACCATGGTGTATCATCGGAAGAACCACAAGTCCGAGAAGAAGTACATATGCGATATATGTTCGAAGACGTTCAACGCGCCGTGCAAACTGCAGCGGCATATAGTGAGCCACCGCGCGGACAAGTTCGTGCTGCGCTACGAGTGCCCCGTGTGCGCGCACATGTTCAACACCAAGTACCACGTGCAGATGCATCTGGCGACGCACCAGAAGGAGGGGCTCATATTGGAGGAGAACCGGAACGACATACTGGCGATGGTGCTGCAGAACGCGCGCAAGATACCGAAGCAGGGCGACGCGCCGAGCAACCTGACCGACCTCATACCCGCCGACGAGCGCAGCCGCGTGTGCAACATATGCGGCGAGGTGTTCCAGCACTTCTACTACCTGGAGGAGCATCTGAAGAGCCACGGCTCCCGGATAGCCATCGAGGACGAGAACAAGCCGGAAGAGCGGAAACACGTCTGCCAAGTGTGCAACAAGAGTTTCAAACTGCACTACTACCTGAAACTGCACAGTTTCACGCACACCAAGGAGAAACCTTACATCTGCCAGCAGTGCGGCAAAGGTTTCATCACCAAAGGTAAACTGAAGCGGCATCTCGAAACTCATTCCGGCCTCAAGAAGTACCAGTGCCACATATGCTACAAGTTCTTCACCAGGCCCAGTTATCTGAGGATACACGTCAGGACTATACATGGCAATCAGGATTATAATTTTCGAGTTGGCAAAGAGTTTGGTATAGCGGCGCCTTTGAATGCGTTGTCGGTTATATCGCAGTATAGCGAGTAA
- Protein Sequence
- MDPNMATEIDPLSMYEYPSFNYHQLHYSYPYDVKLEQPNYVNNNVALNHPNVPLANDPPQNVPQTIENEARPSNGHATDGETKDTDVKPVFDLGKVKKETGKKSNYWSQKITDENFPFYACALCNVSYKLLRDLDSHLVDHKERLTSYDLRMKSKLKKKQLKKEQRKLKKLSKEVKLEVEIKPEDGYIGNEKAEDFINNSKVNETVNSDNTLSKDIVDKVTEKVQEILNNAGTSEGVNNETSNNKVVDNVDAVKHGETKVGEKEVEYNKDLEKIYKCSACQKQFSLSYYLKLHVRSHTDEKPYTCSECGQSFITASKLGRHNKRIHLAIKYQCRICYKIFTRFEYLTRHFDKKHAEDKLEGEPYDYNAILPYLKELEEQLREKAEKEAKPKTEALWDDWPEVDGAHFLQPDPQLSEDKKQFDTHVINHLDIVMEDVKVPVEQMETPEVEVKVEVEEQRDDGDDGDDRRSDAGDRDDFKDESMSDEDYFPSNTWAEPPKMEPCPQSPPRGRRPRPAGALTCKTCGKAISTASYMRIHMRTHTGEKPYKCYVCGRGFITSSKMHRHVLTHSETWEKDGAGVKVEGADVKEEDDPEEGEGKEGDGKKASKKPRKKRVEKKKRDYQKRPHACEFCQKRFLHLEMLQVHKKCHDGESAVLKCYYCLEDVVDEAGLKEHEATHTGAKPFLCTLCGKGYKRRETMVYHRKNHKSEKKYICDICSKTFNAPCKLQRHIVSHRADKFVLRYECPVCAHMFNTKYHVQMHLATHQKEGLILEENRNDILAMVLQNARKIPKQGDAPSNLTDLIPADERSRVCNICGEVFQHFYYLEEHLKSHGSRIAIEDENKPEERKHVCQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITKGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHVRTIHGNQDYNFRVGKEFGIAAPLNALSVISQYSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00342437;
- 90% Identity
- iTF_01136021;
- 80% Identity
- -