Cdum024338.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829530.1:1851803-1869794[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2 84 4.7 0.1 1 23 131 153 131 153 0.92 2 15 0.00057 0.04 15.1 2.2 1 23 298 320 298 320 0.99 3 15 2.6e-05 0.0018 19.3 0.5 1 23 326 349 326 349 0.97 4 15 0.0014 0.095 13.9 3.7 1 23 354 377 354 377 0.94 5 15 2.7e-05 0.0019 19.3 0.6 3 23 541 561 539 561 0.97 6 15 7e-05 0.0049 18.0 2.3 1 23 567 589 567 589 0.99 7 15 0.37 26 6.2 4.5 1 23 641 663 641 663 0.96 8 15 3 2.1e+02 3.4 0.0 2 23 671 692 670 692 0.95 9 15 0.0048 0.34 12.2 1.6 1 23 698 720 698 720 0.95 10 15 0.00032 0.022 15.9 1.2 1 23 726 748 726 748 0.96 11 15 0.00074 0.051 14.8 2.1 1 23 757 779 757 779 0.98 12 15 0.00017 0.012 16.8 0.6 2 23 826 847 826 847 0.97 13 15 0.025 1.7 10.0 6.3 1 23 864 886 864 886 0.96 14 15 1.6e-06 0.00011 23.2 0.7 1 23 892 914 892 914 0.98 15 15 7.2e-07 5e-05 24.2 3.1 1 23 920 943 920 943 0.98
Sequence Information
- Coding Sequence
- ATGGATCCGCACATGGCAACGGAAATAGATCCGTTAAGCACATACGAGTACCCATCATTTAGTTACCATCACCTTTATTCTTACCCTTACGATGTGAAATTGGAACAGACGGTCCCCCAATACATGAATAACAACGTCACGTTGGACCAACACGCCCAGAACGTACCACTCTCTGCTAATGCCCCACAGAACGTACCACAGTTAAGTGAGCATAATACATCACAAAACATTAGCAATGTCAATGATACTCACAATTTTAACAACATTAGTAACATAACTAAGAATGAAACGGATGTCAAACCAGTTTTCGATTTGGGCAAGGTCAAGAAAGAATCCGGCAAGAAGAGCAGTTACTGGTCTCAAAAGATAAACGATGAAAATTTTCCGTTCTACGCTTGTGCTCTGTGCAATGTCAGTTACAAGCTATTACGGGACTTGGATTCACATCTTGTGGACCACAAGGAACGTTTGACGAGCTACGACTTGCGGATGAAGAGcaagttaaaaaagaaaaagttgaAAAGGGAACAGAAGAAACTCAAGAAGTTGTCTAAAGAGGTCAAGTGGGAAGTGGAGATTAAGCCGGAGGATGGTTACATTGGTAATGAGAAAGCTGAGGACTTCTTGAACAATTCTAATGTTAACAATAGTGTTGGTAATGAGAATAAGTCTTTTAGCGATTATGTTGCGAACACAAGTAATGACAATGTGAGTACTAGGAATGATAATGTAAATTCAAGTAGTGATAATGTTAATAAGGGGGCGGATAATGTAAATAATGTTGAAAATGGAGAAActaaaaatattgaaactaaATTTGGGGAAGCAACAATTGGGGAAGTTAAAATTGGAGAAAAAGAAGTTGAGTACAATAAGGATTTGGAGAAGATTTACAAGTGCTCGGCTTGCCAGAAGCAGTTCTCGTTAAGTTACTACTTGAAGCTACATGTCAGATCTCATACggATGAGAAACCGTACACTTGTAGCGAGTGTGGGCAGTCCTTCATCACGGCGAGCAAGCTTGGCCGCCACAACAAGAGGATACACCTGGCCATCAAGTACCAATGCCGGATTTGCTACAAGATATTCACCAGATTCGAGTATCTGACCCGGCATTTTGACAAAAAACACGCCGAAGACAAACTGGAAGGAGAACCGTACGATTACAACGCAATCCTGCCGTACCTCAAGGAATTAGAGGAACAACTGCGGGAGAAGGCAGAGAAGGAAGCGAAACCGAAGACGGAAGCACTGTGGGGCGACTGGCCCGAGGTCGAGGGTACTCACTTCATGCCGCCCGACCCGAAAACAGAGGACAAGAAAGACTTCGACGCTCACGTCATGAACCATCTGGACATAGTCATGGACGATGTTAAGGTGCCCGTGGAACAAATGGATACATCGGAAGTGGAGGTGAAGGTTGAAGTCGAGGAAATGGATCGCGACACCGGCGACACCGGCGACACCGGACACGCGAGCGAGCCCGGGGACGTCAAGGACGAGAGTTTGTCCGACGAGGACTATTTCCCGTCGAACACGTGGGCGGAGCCCCCCAAGATGGAGCCGTGCCCCCTCTCGCCCCCCGCCCCCCGGCGCGGCCGCCAGGGGGGCCCCCTCGCCTGCAAGATATGCAAGAAGACCATCAGCACCGCCTCCTACATGCGGATACACATGCGCACGCACACCGGCGAGAAGCCGTACAAGTGCTACGTGTGCGGGCGCGGGTTCATCACCTCCAGCAAGATGCACCGGCACGTGCTCACGCACTCGGAGACCTGGGAGAAAGACGGCGTCAAAGTGGAGGGCGCCGAGGTAAAGCAGGAGGCCGACCCCGAAGGCGCCGAGGACCAGGATGCGAAAACGAAAAAACCGCAAAAAAAGCGCACGGAAAAGAAGAAACGCGACTACCAGAAGCGGCCTCACGCGTGCGAGTTCTGCCAGAAACGCTTTCTGCACCTGGAAATGTTGCAAGTGCACAAGAAGAGTCACGAGGGCGAAAGCGCGGTGTTAAAGTGCTATTACTGCCTCGAGGACGTAATAGACGAGACGGGGCTGAAAGAGCACGAAGCGACACACTCCGGGCCCAAGCCGTTCCTGTGCACGCTGTGCGGGAAAGGCTACAAGCGGAGAGAGACTATGGTGTACCACCGCAAGAACCACAAGTCCGAGAAGAAGTTCATATGCGACATATGCTCGAAGACGTTCAACGCGCCGTGCAAGCTGCAGCGGCACATAGTGAGCCACCGCGCCGACAAGTTCGTGCTGCGCTACGAGTGCCCGGTCTGCGCGCACATGTTCAACACCAAGTACCATGTGCAGATGCATCTCGCCACGCACCAGAAGGAAGGACTGATTCTGGAAGAGAATCGCAGCGACATACTGGCGATGGTACTGCAGAACGCGCGCAAGATACCGAAGCAGGGCGACGCGCCGACTAACCTCTCGGACCTCATCCCGGCGGACGAGCGGAGCCGCGTGTGCAACATATGCGGGGAGGTGTTCCAGCATTTCTATTACCTGGAGGAGCACCTCAAGAGTCACGGGTCCCGCATCGCCATCGAAGACGAGAACAAGCCCGAGGAACGGAAACACGTCTGCCAAGTATGCAACAAGAGCTTCAAACTCCATTACTACTTGAAACTACACAGCTTCACGCACACCAAGGAGAAACCCTACATCTGTCAGCAGTGTGGGAAAGGCTTCATCACCAAAGGGAAGCTTAAGCGGCACCTCGAGACCCATTCCGGACTCAAGAAGTACCAATGCCACATTTGTTATAAGTTCTTCACGCGACCCAGTTACCTAAGGATCCATGTGAGGACAATTCATGGGAACCAGGACTATAATTTCAGGGTGGGCAAGGAGTTTGGTATAGCCGCCCCGTTGAACGCGTTGTCTGTTATGACGCAGTATAGCGAGTAG
- Protein Sequence
- MDPHMATEIDPLSTYEYPSFSYHHLYSYPYDVKLEQTVPQYMNNNVTLDQHAQNVPLSANAPQNVPQLSEHNTSQNISNVNDTHNFNNISNITKNETDVKPVFDLGKVKKESGKKSSYWSQKINDENFPFYACALCNVSYKLLRDLDSHLVDHKERLTSYDLRMKSKLKKKKLKREQKKLKKLSKEVKWEVEIKPEDGYIGNEKAEDFLNNSNVNNSVGNENKSFSDYVANTSNDNVSTRNDNVNSSSDNVNKGADNVNNVENGETKNIETKFGEATIGEVKIGEKEVEYNKDLEKIYKCSACQKQFSLSYYLKLHVRSHTDEKPYTCSECGQSFITASKLGRHNKRIHLAIKYQCRICYKIFTRFEYLTRHFDKKHAEDKLEGEPYDYNAILPYLKELEEQLREKAEKEAKPKTEALWGDWPEVEGTHFMPPDPKTEDKKDFDAHVMNHLDIVMDDVKVPVEQMDTSEVEVKVEVEEMDRDTGDTGDTGHASEPGDVKDESLSDEDYFPSNTWAEPPKMEPCPLSPPAPRRGRQGGPLACKICKKTISTASYMRIHMRTHTGEKPYKCYVCGRGFITSSKMHRHVLTHSETWEKDGVKVEGAEVKQEADPEGAEDQDAKTKKPQKKRTEKKKRDYQKRPHACEFCQKRFLHLEMLQVHKKSHEGESAVLKCYYCLEDVIDETGLKEHEATHSGPKPFLCTLCGKGYKRRETMVYHRKNHKSEKKFICDICSKTFNAPCKLQRHIVSHRADKFVLRYECPVCAHMFNTKYHVQMHLATHQKEGLILEENRSDILAMVLQNARKIPKQGDAPTNLSDLIPADERSRVCNICGEVFQHFYYLEEHLKSHGSRIAIEDENKPEERKHVCQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITKGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHVRTIHGNQDYNFRVGKEFGIAAPLNALSVMTQYSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00462625; iTF_00021538; iTF_01136021; iTF_01135033;
- 90% Identity
- -
- 80% Identity
- -