Basic Information

Insect: Pandemis corylana
Gene Symbol: -
Assembly: GCA_949127965.1
Location: OX421875.1:3114598-3116346[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.003 0.2 12.9 1.5 1 23 9 31 9 31 0.95

2 16 8.2 5.3e+02 2.0 0.2 2 23 59 81 58 81 0.91

3 16 0.0017 0.11 13.6 0.6 1 23 101 124 101 124 0.96

4 16 0.00011 0.0073 17.3 0.2 1 23 129 152 129 152 0.94

5 16 0.007 0.45 11.7 1.1 1 23 157 180 157 180 0.98

6 16 6.3e-05 0.0041 18.1 1.9 2 23 183 205 183 205 0.96

7 16 0.4 26 6.2 0.8 2 21 212 231 211 232 0.93

8 16 0.0021 0.14 13.4 1.6 1 23 289 312 289 312 0.97

9 16 1.5 98 4.3 0.2 3 23 341 362 339 362 0.94

10 16 0.0077 0.5 11.6 0.1 2 23 385 408 384 408 0.95

11 16 4.1e-05 0.0026 18.7 0.3 3 23 415 436 414 436 0.94

12 16 0.0016 0.1 13.7 3.6 2 23 441 463 440 463 0.93

13 16 0.00039 0.025 15.7 3.4 1 23 468 491 468 491 0.98

14 16 3.8e-06 0.00025 22.0 5.0 1 23 495 518 495 518 0.98

15 16 0.00027 0.018 16.1 0.3 2 23 525 546 524 546 0.96

16 16 7.6e-06 0.0005 21.0 0.4 1 23 552 574 552 574 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.003	0.2	12.9	1.5	1	23	9	31	9	31	0.95
2	16	8.2	5.3e+02	2.0	0.2	2	23	59	81	58	81	0.91
3	16	0.0017	0.11	13.6	0.6	1	23	101	124	101	124	0.96
4	16	0.00011	0.0073	17.3	0.2	1	23	129	152	129	152	0.94
5	16	0.007	0.45	11.7	1.1	1	23	157	180	157	180	0.98
6	16	6.3e-05	0.0041	18.1	1.9	2	23	183	205	183	205	0.96
7	16	0.4	26	6.2	0.8	2	21	212	231	211	232	0.93
8	16	0.0021	0.14	13.4	1.6	1	23	289	312	289	312	0.97
9	16	1.5	98	4.3	0.2	3	23	341	362	339	362	0.94
10	16	0.0077	0.5	11.6	0.1	2	23	385	408	384	408	0.95
11	16	4.1e-05	0.0026	18.7	0.3	3	23	415	436	414	436	0.94
12	16	0.0016	0.1	13.7	3.6	2	23	441	463	440	463	0.93
13	16	0.00039	0.025	15.7	3.4	1	23	468	491	468	491	0.98
14	16	3.8e-06	0.00025	22.0	5.0	1	23	495	518	495	518	0.98
15	16	0.00027	0.018	16.1	0.3	2	23	525	546	524	546	0.96
16	16	7.6e-06	0.0005	21.0	0.4	1	23	552	574	552	574	0.98

Sequence Information

Coding Sequence: ATGCCTTTCAAATGGCGGGGCACGTATCTATGTTTCTACTGCGGGAAAAACTATACGGAGTATCCCGAGTTTAGAAAGCACACGAAAGCGCACGGCCTGTGCTCCACCAACGACTATTCCCTGAAGATAATCAAGGGGAACCACATAGAGATAAAGGTGGACGTCTCTGACATCGTTTGCGAGATTTGCTGCGAACCGTTCGGCAGATTCGATGAAATTGTCGACCATCTGAACCTGAAACACGATCTCCGATACGACTCTAGCATAGAaattcctttccagctatacaggCTGTCAGACTTCCGTTGCTTAATGTGTGACGAGCAATTCACGTATTTTGGCTATCTAGTGAAACACGTGAACAATGTTCACCCGCAGAACTGCTTCATTTGCGATGACTGTGGTCTgacgtttaataaaaaaagggaCCTCGCTCTCCACGCGAGAGACAATCATCGCCTGGGAGGATATTCCTGCGACCAATGCGCAGCCAACTTTAAAACTAGAGGCATCCTAAAGAAACATCAAAACACTTTCCATTTCAGGAAATGTAAAGACTGCTCCTTAACTTTCGCGTCCCACAGCCTTCTGCAGAAACACATCCAGTTAGACCACCCGGATGACGGCAGCTTGAAGTGCGTGTATTGCGCAAAAGAATTGCATTCTAAACAGGGTTTGAAGCAGCATCTGAACAAGTGCGAAATAAGAATGCTTACGCAACTAGAAGCCCCACGGACCACTAGCGCTTTTCCAGAAGATTCTTACGTAGAGCCCAAAAAGAAACAGAACATTTTGCAAATCCGACAAAACATCCAATGCGTGCTCAATATGTCCACCGCCATACCGTTCAAATTCTTCTCAAAATACTCTTGTTTTTACTGTTCTAAAAAGTTCATCGAGTTCGAAGATCTAAAAGAACATACTTTGAGAGAGCATCCCGTGTGCGACGTTAAGTCGAAGTGTATGAAAAAATGTAAGGGCGAGAGAATAAGCGTTAAAGTCGACGTCGCATGCCTCGCTTGCAAGGTGTGTTGTCGACCATCTGATGACCTAGACTCTCTGATAGACCATCTCATAACAGACCACAAGGCTAACTACGACAAAACGATGAAACGCTGTTTCGAACCTTTCCGGATAATAAAAGACAACATGCCGTGCCCTCTTTGCCCCGACCGAGCATTCCGATACTTCAGCACACTCCTCAGACACATCAATTCTGAACACAGCAACAACAACAGAATATGCGATTTCTGCGGACGTAGCTTCAAAAACGTGACAAATCTCAAAGTTCACATCACCTACGCTCACACCGGTTCTTGTGAATGCGACGTTTGCGGACTCAAATTCAAAAATCAGTGGTGTCTGGCTCGCCATAAAGCCAAAACCCACAACGCTAAAGACTACAAGTGCCCCAAATGTCCAGAGCAGTTCCAATCGCAGTACCACAAACAGAAACACCTAATAACCACCCACGATATAGGCCACAAGTGTAGCTACTGCGGCAAAATGTTCACTAGGAACTCTTTTATGAAAGATCATATACGGCGAACGCATTTAAAAGAGAAAAACGTGCCTTGCTCAGTGTGCAATGAGAAATTTTTCGACAACTATCTCCTTCGCATGCATATGGTTAAGCATGAGGGAGAAAGGAAGTTCAGCTGTGAAGTCTGTGGCAAGGCGTTCTTGCGACGTAGCAACCTCAGCTCTCACATGGATATGCATAAGAAATACGGACACGTTCAAGTATAG
Protein Sequence: MPFKWRGTYLCFYCGKNYTEYPEFRKHTKAHGLCSTNDYSLKIIKGNHIEIKVDVSDIVCEICCEPFGRFDEIVDHLNLKHDLRYDSSIEIPFQLYRLSDFRCLMCDEQFTYFGYLVKHVNNVHPQNCFICDDCGLTFNKKRDLALHARDNHRLGGYSCDQCAANFKTRGILKKHQNTFHFRKCKDCSLTFASHSLLQKHIQLDHPDDGSLKCVYCAKELHSKQGLKQHLNKCEIRMLTQLEAPRTTSAFPEDSYVEPKKKQNILQIRQNIQCVLNMSTAIPFKFFSKYSCFYCSKKFIEFEDLKEHTLREHPVCDVKSKCMKKCKGERISVKVDVACLACKVCCRPSDDLDSLIDHLITDHKANYDKTMKRCFEPFRIIKDNMPCPLCPDRAFRYFSTLLRHINSEHSNNNRICDFCGRSFKNVTNLKVHITYAHTGSCECDVCGLKFKNQWCLARHKAKTHNAKDYKCPKCPEQFQSQYHKQKHLITTHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGERKFSCEVCGKAFLRRSNLSSHMDMHKKYGHVQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01072795;
90% Identity: iTF_00411709;
80% Identity: -