Nudd048076.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Notocelia uddmanniana
Gene Symbol
-
Assembly
GCA_905163555.1
Location
LR991076.1:5925775-5928034[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.001 0.12 14.5 0.1 3 23 4 25 3 25 0.96
2 16 0.00081 0.093 14.8 4.7 1 23 29 52 29 52 0.97
3 16 0.0002 0.023 16.7 0.5 2 23 59 80 58 80 0.97
4 16 0.0078 0.9 11.7 0.9 1 23 129 151 129 151 0.95
5 16 0.0009 0.1 14.7 0.6 1 23 221 244 221 244 0.98
6 16 0.00021 0.024 16.7 0.4 1 23 249 272 249 272 0.95
7 16 0.00036 0.041 15.9 1.7 1 23 277 300 277 300 0.98
8 16 0.00027 0.031 16.3 1.3 2 23 303 325 303 325 0.96
9 16 0.0019 0.22 13.6 1.6 1 23 409 432 409 432 0.97
10 16 0.0046 0.52 12.5 0.4 2 23 505 528 504 528 0.94
11 16 5.8e-05 0.0067 18.4 0.3 3 23 535 556 534 556 0.94
12 16 0.0023 0.26 13.4 3.6 2 23 561 583 560 583 0.93
13 16 0.00055 0.063 15.4 3.4 1 23 588 611 588 611 0.98
14 16 5.4e-06 0.00062 21.7 5.0 1 23 615 638 615 638 0.97
15 16 0.00039 0.045 15.8 0.3 2 23 645 666 644 666 0.96
16 16 1.1e-05 0.0012 20.7 0.4 1 23 672 694 672 694 0.98

Sequence Information

Coding Sequence
ATGGTGGACTGTCTCGAATGCCCGGAGAAGTTTGTATCGCAATACGCGATGCAGAGGCACCGCATCACGGTGCACGGCTCAGGCCACAAGTGCACGTTCTGCGGCAAACTGTTCACCAGAAACTCCTTCATGGACAACCATATTAGACGGACCCACCTTAAAGAgaaaaacgtacagtgctcgcTCTGCAACGAGAGATTTTTCGATTCAGCACTCCTTAAAAACCATATGGTGAAACATATAGGCGAGCGGAATTTCCACTGCGACGTCTGTGATGAATATCCGCACCGATCGTACGACAGCTGTACCTCTCAGCGGCGGaggaaaaatttacaaatattattcaATAACACCTCAGTAATGCCTTTCAAATGGCGGGGCACGTACTTATGTTTCTACTGCGGGAAAAACTATGCAGAGTACCCGGAGTTCAGAAAGCACACAAAGGCACACGGGCTGTGCTCCACTAATGATTACTCCCTCAAAAATATTAAAGGGAACcacatagaaataaaaattgacGTCTCTGACATCGTTTGCGAGATTTGCTGCGATCCCTTCAATAATTTCGACGAGATTGTCGAGCATTTGAACTCGAAACATGATCTGAGATACGACCCTAACGTAAAAATTCCCTTCCAACTGTATAGATTATCAGATTTCCGGTGTTTGTTGTGCGATGAACAGTTCAGTTACTTCGGTTATTTGGTGAAACATGTCAACACAGTCCATCCACAGAACTGCTTTATATGCGATGACTGTGGACTCACCTTTAACAAGAAAAGAGACCTCGCTCTGCATTCCAGAGAAAACCATCGCCTGGGCGGGTACCCATGCGACCAGTGCACGAGCAATTTCAAAACTAGAGCCATGTTGCGTCAACACCAAAATACATTCCACTTTAGGAAATGCAAAGACTGCGCTTTAACGTTCGCGTCGCATAGTCTCTTACAGAAACATATACAGTTAGACCATCCTGATGATGGTAGTTTGAAATGTATATACTGTGCGAAAGAACTGCATTCCAAACAGGGCTTGAAGCAGCATCTTAATAAATGCGAAGTTAGATTGCTTTCTCAGATAGAAACTCCTCTTCCCAATAGCGCATTTCTTGAAGACTCGTACGTCGAACCCAGAAAGAAGCAAAACATTTTGCAAATTCGGGAAAACATCCAGTGCGTGCTAAATATGTCCACTGCTATACCGTTTAAATTCTTCTCGAAGTATTCGTGTTTCTATTGTTCCAAAAAATTCATCGAATTTGATGACCTGAAAGAACACACTTTGAGAGAACATCCGGTATGTGATGTTAAATCGAAATGCATGAAAAAATGCAAGGGAGAGAGAATTAACGTTAAAGTGGACATCGCTAACCTTGCTTGCAAGGTTTGCTGTCAACCCATCGATGACTTAGACACCCTAATAGACCATCTCATATCTGAACATAAAGCTAACTATGATAAATCTTTAAAGCGCTGCTTTGAAGCGTTCCGTATTATAAAAGACAACATGCCGTGCCCGTTATGTTCCGACAAAACCTTTAGATACTTCAGCACTCTTCTAAGACACATCAATTCAGAGCACAGCAACAATAACAGAATCTGCGATTTCTGCGGGCGCAGTTTTAAAAACGTCACAAATCTCAAAGTTCACATCACCTACGCCCACACCGGCTCCTGCGAATGTGATGTATGCGGTCTCaaatttaaaaaccaatggTGTCTAGCGCGACACAAAGCGAAAACACACGACGCGAAAGACTACAAGTGTCCCAAATGCCCCGAACAGTTCCAATCTCAGTACCACAAGCagaaacacttaataacgacaCACGACATCGGCCACAAGTGTAGCTATTGCGGGAAAATGTTCACAAGGAACTCCTTCATGAAGGACCATATTCGCAGAACGCATTTGAAAGAGAAAAACGTGCCTTGCTCGGTTTGTAACGAAAAGTTCTTTGATAACTATCTCCTTCGCATGCATATGGTGAAGCATGAGGGAGAGAGGAAGTTTAGTTGTGAAGTTTGCGGGAAAGCATTTCTTAGGCGCAGCAATCTCAGCTCACATATGGATATGCATAAAAAATACGGACACGTCCAATAG
Protein Sequence
MVDCLECPEKFVSQYAMQRHRITVHGSGHKCTFCGKLFTRNSFMDNHIRRTHLKEKNVQCSLCNERFFDSALLKNHMVKHIGERNFHCDVCDEYPHRSYDSCTSQRRRKNLQILFNNTSVMPFKWRGTYLCFYCGKNYAEYPEFRKHTKAHGLCSTNDYSLKNIKGNHIEIKIDVSDIVCEICCDPFNNFDEIVEHLNSKHDLRYDPNVKIPFQLYRLSDFRCLLCDEQFSYFGYLVKHVNTVHPQNCFICDDCGLTFNKKRDLALHSRENHRLGGYPCDQCTSNFKTRAMLRQHQNTFHFRKCKDCALTFASHSLLQKHIQLDHPDDGSLKCIYCAKELHSKQGLKQHLNKCEVRLLSQIETPLPNSAFLEDSYVEPRKKQNILQIRENIQCVLNMSTAIPFKFFSKYSCFYCSKKFIEFDDLKEHTLREHPVCDVKSKCMKKCKGERINVKVDIANLACKVCCQPIDDLDTLIDHLISEHKANYDKSLKRCFEAFRIIKDNMPCPLCSDKTFRYFSTLLRHINSEHSNNNRICDFCGRSFKNVTNLKVHITYAHTGSCECDVCGLKFKNQWCLARHKAKTHDAKDYKCPKCPEQFQSQYHKQKHLITTHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGERKFSCEVCGKAFLRRSNLSSHMDMHKKYGHVQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00021542; iTF_00656363; iTF_01136014; iTF_00680847; iTF_00660529; iTF_01135029; iTF_00658672; iTF_00009331; iTF_00462622; iTF_00773092; iTF_00410561; iTF_00149668; iTF_00289880; iTF_00411709; iTF_00657491;
90% Identity
iTF_00411709;
80% Identity
-