Pcor022990.2
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421875.1:3096337-3107874[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0018 0.12 13.5 5.2 1 23 253 276 253 276 0.93 2 26 1.1 70 4.8 0.1 3 23 303 324 301 324 0.95 3 26 0.015 0.95 10.7 0.6 1 23 349 371 349 371 0.98 4 26 0.48 31 5.9 1.1 1 23 375 397 375 397 0.78 5 26 0.99 64 4.9 3.9 1 23 401 424 401 424 0.93 6 26 7.9 5.1e+02 2.1 8.7 2 23 431 453 430 453 0.94 7 26 0.0016 0.1 13.7 0.4 1 23 460 483 460 483 0.95 8 26 0.0013 0.085 14.0 4.9 1 23 489 511 489 511 0.98 9 26 5.7e-06 0.00037 21.4 2.7 1 23 517 539 517 539 0.98 10 26 5.3e-05 0.0034 18.4 0.8 1 23 545 567 545 568 0.96 11 26 0.071 4.6 8.5 0.9 1 23 611 633 611 633 0.96 12 26 0.22 14 7.0 0.0 2 23 662 684 661 684 0.92 13 26 2.3 1.5e+02 3.8 0.1 2 23 705 727 704 727 0.91 14 26 0.0011 0.074 14.2 2.1 2 23 733 755 732 755 0.95 15 26 0.0087 0.56 11.4 1.2 1 23 760 783 760 783 0.96 16 26 1.5 98 4.4 0.1 2 23 786 808 785 808 0.95 17 26 0.036 2.3 9.5 1.4 2 21 815 834 814 835 0.93 18 26 0.011 0.74 11.0 0.4 1 23 896 919 896 919 0.92 19 26 0.13 8.3 7.7 0.1 3 23 948 969 946 969 0.93 20 26 0.14 9 7.6 0.9 3 23 993 1015 991 1015 0.95 21 26 0.0011 0.068 14.3 0.6 3 20 1022 1039 1020 1043 0.90 22 26 0.035 2.3 9.5 0.4 1 23 1048 1071 1048 1071 0.97 23 26 0.00028 0.018 16.1 0.4 2 23 1077 1099 1077 1099 0.94 24 26 7.8e-05 0.0051 17.8 4.7 1 23 1103 1126 1103 1126 0.97 25 26 0.00034 0.022 15.9 0.6 2 23 1133 1154 1132 1154 0.96 26 26 0.011 0.69 11.1 3.3 1 23 1160 1182 1160 1182 0.97
Sequence Information
- Coding Sequence
- ATGGATTTTGACGAGATTGTTGTTAAAGAGAGCCCCGGCTTGTGCCGGTGCTGCCTTTCCGAGGGCTGTTATAAAGACTTAGGTTCGGAGTATAGTTGGATGAGCGAAACCGAAATTTATGCCGATATGTTACTAGAATGCTTCGATATCAGCATATCGCAGCACCCGACCGGGCCGAACGGCTCGAACCGTCTCATCTGCGAGGTATGCATCACGCGGCTGCGGGACGCCTGCAACTTCAAGAAGCAAGTGCTGGAGTCGGAGAAGCGGTTCGTGGGCATGGTGGGCCGCGGCGAGTTCCGGCCCAAAGTGCTGCTGTACCAGACGCAGATGAAGACTGAGCTCAACATGGACATAGAGGAGGATACCGGAGCTGATGATGCTGAGGTGGAATATCTCGAAGATGATGCAGACTATGTTGATGAGGACCTCCTGAAAAACGAAGACTATGGCGAACCCTCAGTGTCTGAAGACATAACAGTCTCCGCTTTAGCCGTGAAAGGCAAGCGGGGGCGCCCCAAGAAGTCCTCAACAGCTGTGAAGCCGGAGAAGAAGGCAAAGGTGCCCAAGCTTGAAGAGAAACCCACCAAGTCCAAAGCTGTTGCTAAAGGTAAGAAACGGCCGGAACCCGCGTCCGACGCAACGACAAATAGGTCGCAATTGTCAGCAACCAAACGAAACAGGCTCATGAAGGCAAACGCCATCATTGTTCTAGAAACGTCCACAGTTGTGCCTTTCAAATGGCAGAGGCAGAATTACCTATGTTTCTTTTGCCACAAGACATTTAAGAGCACTGAATCCCTCAAAAAACATACCAGGGATGATCACCAGAAATCCAACGTCAAAGCCGCCGTTTCTTACCTAAGGAGAGACGAGAAAGTTAAAGTTGACGTGACTGTTATAGACTGCAGACTCTGTAACGCAAAGTTAGACGACATTAACTCGCTTATAACGCATCTCCGGTCAGCGCATGACAAAAAATTCACCGAACAATATGGTTGCTTCGGCATCATACCTTACAGACTTGATTGCGACAATAATACCTTCCAATGCGCAGTTTGCAACGAACAATTTCAATACTTTATCAAACTAAACGAACACATGAATCTACACTACGGGAATTACATATGCGATATATGTGGCAAAGGTTTCCTCAGCCAGAACAGGTTGAGGTGTCACGTTTTGAATCATGGCTCGGGTTTCCGTTGCAGCCTTTGTCCGGAGACCTTTGATTCTCTAACAATGAGACACAACCACGAAtgcaaagtgcataacaaggagAAACTTTGCAAATGTTTTTACTGTGACGAAACTTTTCCAAGTTACATGCGGCGCAAGCGGCACCACCATACCGTGCATAACCTAGAAATACCAGGCTTCAACTGCCCGATATGTCACAAGGCGTTCGAAATAGAAAGCAAAATGCAAGTGCATCTCAAAGAAGTGCATGTGAGAGAAAAGAATTACTCGTGCACGATGTGCGATCAGAAGTTTTTCTCAAAGACACACGTTCAGAAGCATATGGTGAAGCATTTTGGTGAGAGAGTGCACCAGTGCGAGGTGTGCAAGAAGTCGTACGCGAGGAAACAGACTCTGAGGGATCATATGCGTATCCATAGCAACGATAAGAGATTTGTATGCGCACTGTGCAGCCAGGCTTTTGTGCAGAATAACAGTCTGAGACTGCACATGAGGGTGCATCATCCTGAGGCTGTCAATGTTAAACCGCGGAAATACAAAGGCTGCGAATCGTCGTCGATGCGCAGACGGAAAAATCTCCAAATACTGTTCAACACCACAACGATAATACCTTTCAAATGGCGCGGCAAATACCTCTGCTTCTATTGCAGCAAAGACATAGCGGAGTACTCCGCACTCCGCAAACATACGAAGTCCCACGGGGACTGCTCTACGCGCGATCACTCCTTAAAAGTCCTCAAGGGAGGCCAAAacatggaaattaaaatagacgTATCTGATATTAGTTGCGAAATCTGTAGCGAACCATTCCCTACTATAGATGATATAATAACGCATTTGTTCATCAAACATAAGTTAGAATACGATAGGGAAGTAGACATGGCTATAGAAGAGTATAGGCTGGTAGATCTCAGTTGTCTAGCGTGTGAGGAAAAATTCGCGTATTTCGGCTACTTAGTGTCCCATGTCAACAATAGTCATCCTAAGAACTGCCTCATTTGCGACAAGTGCGAGCAGAAGTTTAACAAGAAACGTGACCTGTTCTCTCACATGAAGAACTACCATAGAGAAGGTGGTTATCAGTGTGAATCGTGCCCGCAGTCTTTTAGTTCTTTAAATATTCTCCGTAAACATAGAAACAATCGACATTTGACTAGATGCAGCGTTTGCCAGTTAAAACTGCCATCGGCCGCGTTAAAACAAAAGCATATAGAAATCGAACATCCTGATGATGGCTCTTTACAGTGCGACAATTGCTTCAAAGAATTCCACACGAAACAGGGGCTCCGAATGCATGCAAGGAAGTGTAAAGGCGAAGATGATTTGTTTCAAATTGAAATAAGAAAAAGAGACTACGATCCTATGGACCTGGATCAGAACTACGAAGACCCCGTGAAAAGACCTAGCGTTAAACAGATTAGGGAAAATATAGTCATAGTTATTAACATGTCGACGGCTATACCTTTTAACTTCTACAAGAATAAGTTTAACTGTTTTTATTGCTCCAAAGATTTCCCCGACTCTGATTTGATGCGTGAGCATACTGTTATCGAACATCCTGTGTGCGACGTCAAACAGAAATGTATAAGGAAATGCAGGGAATCTGTAGCGTGTGTCAAAGTTGACATTTCCTCTCTAGCTTGTAAATTGTGCTTCGAGTCTGTATCAGACTTCGATAATTTGTTagatcatttaattttaaaacatgatGCTAATTACGATAAGTCTATAACAACTTGCTTGCAACCTTATAGGCTAATAAAAGACCACATGGCTTGCCCGCACTGTCCCAACGAAGCCTTCAGGTTCTTCGGAACGTTATTAAAACATATGAACAATAAACATACTAATAACAATATAATTTGCGTTTATTGTGGACAAACTTTTAGGCGGGATCAGAATCTGCGCGTTCATATCTGGAGACATCATAGGGACGGTAGGTTTAAATGTACCATTTGCGGTGCGGATTGTAATATACCGTCTAGACTGTACATGCATATGGCTAAAGCCCACGGCGTCAAGGCGGCCAAATGTCCCAAATGTCCAGAGAGCTTCTCAACACAGTATTTAAGACAAAAACATCTCATTGAAGTCCACAATTCGGGCCACAAGTGCTCCTATTGTGGGAAATTGTTCACGCGTAATTCTTTCATGAGAGACCACATTCGACGGACTCACTTGAAGGAGAAAAACGTCGAATGCTCCATTTGTAATATGAAGTTTTTCAACAACATACTCCTTAGACGCCACATGGTTAAACATAGCGGCGAGAAGAACTTCCATTGCGATATTTGCGGTGAAAGATTCTTTTGGAGAAAAAGTCTTCGGACTCACATGACTAGGCACAATAAGCACATTAATCCATCACATATTTAG
- Protein Sequence
- MDFDEIVVKESPGLCRCCLSEGCYKDLGSEYSWMSETEIYADMLLECFDISISQHPTGPNGSNRLICEVCITRLRDACNFKKQVLESEKRFVGMVGRGEFRPKVLLYQTQMKTELNMDIEEDTGADDAEVEYLEDDADYVDEDLLKNEDYGEPSVSEDITVSALAVKGKRGRPKKSSTAVKPEKKAKVPKLEEKPTKSKAVAKGKKRPEPASDATTNRSQLSATKRNRLMKANAIIVLETSTVVPFKWQRQNYLCFFCHKTFKSTESLKKHTRDDHQKSNVKAAVSYLRRDEKVKVDVTVIDCRLCNAKLDDINSLITHLRSAHDKKFTEQYGCFGIIPYRLDCDNNTFQCAVCNEQFQYFIKLNEHMNLHYGNYICDICGKGFLSQNRLRCHVLNHGSGFRCSLCPETFDSLTMRHNHECKVHNKEKLCKCFYCDETFPSYMRRKRHHHTVHNLEIPGFNCPICHKAFEIESKMQVHLKEVHVREKNYSCTMCDQKFFSKTHVQKHMVKHFGERVHQCEVCKKSYARKQTLRDHMRIHSNDKRFVCALCSQAFVQNNSLRLHMRVHHPEAVNVKPRKYKGCESSSMRRRKNLQILFNTTTIIPFKWRGKYLCFYCSKDIAEYSALRKHTKSHGDCSTRDHSLKVLKGGQNMEIKIDVSDISCEICSEPFPTIDDIITHLFIKHKLEYDREVDMAIEEYRLVDLSCLACEEKFAYFGYLVSHVNNSHPKNCLICDKCEQKFNKKRDLFSHMKNYHREGGYQCESCPQSFSSLNILRKHRNNRHLTRCSVCQLKLPSAALKQKHIEIEHPDDGSLQCDNCFKEFHTKQGLRMHARKCKGEDDLFQIEIRKRDYDPMDLDQNYEDPVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTVIEHPVCDVKQKCIRKCRESVACVKVDISSLACKLCFESVSDFDNLLDHLILKHDANYDKSITTCLQPYRLIKDHMACPHCPNEAFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCTICGADCNIPSRLYMHMAKAHGVKAAKCPKCPESFSTQYLRQKHLIEVHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFFWRKSLRTHMTRHNKHINPSHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01136017;
- 90% Identity
- iTF_01136017;
- 80% Identity
- -