Pcor022560.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- ZFY_2
- Assembly
- GCA_949127965.1
- Location
- OX421874.1:8501252-8522948[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.5 2.3e+02 3.2 0.4 2 23 46 68 45 68 0.94 2 19 0.7 45 5.4 0.1 3 23 93 114 92 114 0.94 3 19 0.00018 0.012 16.7 1.3 1 23 120 142 120 142 0.98 4 19 0.01 0.66 11.2 0.9 1 23 148 171 148 171 0.97 5 19 0.16 10 7.4 0.6 1 23 180 202 180 202 0.98 6 19 2.3e-05 0.0015 19.5 0.7 3 23 210 230 209 230 0.98 7 19 5.8e-05 0.0037 18.3 4.3 1 23 236 258 236 258 0.98 8 19 0.00046 0.03 15.4 0.3 1 21 264 284 264 285 0.92 9 19 0.014 0.94 10.7 1.4 1 23 514 536 514 536 0.98 10 19 0.017 1.1 10.5 1.0 1 23 543 565 543 565 0.98 11 19 0.31 20 6.5 0.3 1 23 569 592 569 592 0.87 12 19 0.0004 0.026 15.6 6.7 1 23 599 622 599 622 0.94 13 19 0.0002 0.013 16.6 0.1 2 23 628 650 627 650 0.95 14 19 2.8e-05 0.0018 19.2 0.4 1 23 663 685 663 685 0.96 15 19 0.0083 0.54 11.5 2.0 1 22 691 712 691 716 0.92 16 19 0.00086 0.056 14.6 2.1 2 23 725 747 724 747 0.96 17 19 0.0011 0.074 14.2 0.1 1 23 753 776 753 776 0.97 18 19 3e-06 0.00019 22.3 0.1 1 23 785 807 785 807 0.99 19 19 0.0057 0.37 12.0 0.1 1 23 813 836 813 836 0.97
Sequence Information
- Coding Sequence
- ATGGAAGATTTGAATTTAGAACATGGCATAGACTATGAATCTGAAGATGAGTTGCCTCTTTTAgacattaaaaaagaaaaaaaccatGAAATCAGCAAAACAGGAGTTGAAATGTTAATTAATGATTTAAAGGTTAAATGTCTCACTTGTTTTGATAAATTTGAGAATCAGCTCGAACTGGTTAGTCATTACAACAATGTCCACAAAGgGCGAACATATAAAACAGTATCTGAGATCATCCGTCACGGCAGAGCCCATGACGGTGCGAAGGTGGCCTGTTCGTTTGGATGCGGATTCGCTTCTGTGTACTCCGGAGCACTGAAGACCCATGAGGACCGGCACAGGCAAGATTTCAAGTATACATGTGAGACATGCAACAAGAGCTTCCAAGTGAAGACATGGTACGAACAACATCAGAACATACATAAGGGTGTCAAACCGTTTGTGTGCCAAATATGTGGTTTAGCGTTCCATATGGACAGATATCTGACATCGCATCGCAACTCTGTTCATCCCAATGCGTCTCCGCTAAACCGATACGTATGTGTGCAGTGCTCGCAACCCTGTGGGACTATGAAAGCTCTCACTCTACATCTGAAGGAGCACGGAATAACGTCGAGTTTGCTTTGCGATTTGTGCGGCAAATCAGTGTCGAGCTCTGAACAGCTCAAGAAACACAGACTGACGCATTCCGGCATCAAACCCTTTTCTTGCAATTCGTGCGACAAAACGTTTGCGAAGAAGTGCAACCTGAAGTTGCATCAAATAACGCATACGGGAGAGCGCGCGCATGCGTGCGAGTCGTGCGGCAAACAGTACACCCAAAGGAGCGCCTTGCTTAGACATGTTAATAGCTATTGTTCTATGAAAACTTGCATGATGGAGCATTCAGCTGAAATGGGGCCGATTCAGTATTGTTTCGGATGTCTGACTGGAAAGGAGAGTTCGGTTTATTTTGTCAACTTCGGAAATCCGGCGTTGAAAAGCATTTTTCAGACTGACAAGTTACTGTTGTGCTTCCTTTGCGAACGCACTTTGCAACAAGCAGAAATGTTCATACAAAATGTTCAGAACAACCAAGTTCTATTGGAAAATCAACACAGTTTAACGGAATCCGAGATTTACTCGGCACGAAGCCAAATCCGAACAATCCTTGACAACACGGATTACAGAGCCGATGGCTCTAATACCGAGAAGTCTGTCTCTATTGTGCGGAACACCCACAAGGATGTGAAGGTTAAGCAGGAGATGAAGGAAGAGAGTGAAGTCTCCGAAGTAGATCCTGACGATGATAATGATTATCAAGACAACTATGTGAAAGATGAAGATTACCCTCTCAAAGATTTGCTTAAAGCAGAAGTGGTTGTGGAGGAAACAGATTCAAAAAGTCTGAAACGAAGTCtgaataaaagaaaatataaaaaacacaaGAAACAATCGCAAGAAGCACACATCATTGAGACTGTCTACATAACGCGCGAGCAGTGCCTAGaggagcgagagagacagaagCTGGAGCGACGATATGTTGTCTCAACTTATAAATGTGAGGATTGCATCAAAGGGTTTAATTTTAAAGAGAGCTACGACAAACATTTGGAGAAACACGATGTGagcaaTGGCGACTATCAATGTGAAATCTGTAAACTTAGAATGAGTACGGAAGAAAAATTGATCAGCCACAAGAGATACCATGAAGTccGCTACCGCTGTCCTGTGTGTGGCTTGACTCGTATCAGTCGGCTGACCGTCAAGGACCACTACTCGGCATTCCATACCAACAACCAACATGAGCACAACTGTCCGCACTGCTCCAAGTGTTTCAAACGTCAAGTGTCATGGCGGAAGCATATATCGAACGTGCACTCACACAAGCGCGTGTCGTGCGGCTACTGCAACAAGAGCTACGCCAACAAAGACGTCCTCAAGGCGCATTTGATTGTTCAACATCCGAGAGAAGTATCAGCCGGTGAAATAACCAAGTCGCACGTCTGCGAAGAATGCGGGAAGGCGTTCAAAGCGCCTTCCCAACTGAAGTTACACAGCATCAAGCACTCGCTAAGCAAGGACTACTACTGCATTGAGTGCGACAAGAGTTTCAAATCGGCATCAATATTGAAACATCATTTGAAAACAACATCCACTCACGTCAGCTACGTAGACCTAccTTTACAGTGTCAACACTGCGATAAGCGGTTCGCGATCCGTCGCGACCTAGACAGACACACTAACAGGGTGCATTTGAACATCAAACCGTTCCAGTGTGACCAGTGTGAAAAAGCGTACGTGAACGGGTGGTCTTTGAACGAGCACCGCCGTCTCATACACGAGGGGTACAAACGTCCCCTAAAGTACCCCTGCCCTATGTGTGATAAGGTCTTCGACCGTAACCAGGTGCTGAAGGGGCATATACGCACGCACACCGGCGAGCGCCCCTACCAGTGCAGCCGCTGCCCCGCGCAGTTCAGCCAGGCCAGCGTGCTCGGCACGCACGTGCGCCTCATACACCTGCGCCTCACGCGCGACGGACGCCCGAAGACCAAGCACACCAAGTAG
- Protein Sequence
- MEDLNLEHGIDYESEDELPLLDIKKEKNHEISKTGVEMLINDLKVKCLTCFDKFENQLELVSHYNNVHKGRTYKTVSEIIRHGRAHDGAKVACSFGCGFASVYSGALKTHEDRHRQDFKYTCETCNKSFQVKTWYEQHQNIHKGVKPFVCQICGLAFHMDRYLTSHRNSVHPNASPLNRYVCVQCSQPCGTMKALTLHLKEHGITSSLLCDLCGKSVSSSEQLKKHRLTHSGIKPFSCNSCDKTFAKKCNLKLHQITHTGERAHACESCGKQYTQRSALLRHVNSYCSMKTCMMEHSAEMGPIQYCFGCLTGKESSVYFVNFGNPALKSIFQTDKLLLCFLCERTLQQAEMFIQNVQNNQVLLENQHSLTESEIYSARSQIRTILDNTDYRADGSNTEKSVSIVRNTHKDVKVKQEMKEESEVSEVDPDDDNDYQDNYVKDEDYPLKDLLKAEVVVEETDSKSLKRSLNKRKYKKHKKQSQEAHIIETVYITREQCLEERERQKLERRYVVSTYKCEDCIKGFNFKESYDKHLEKHDVSNGDYQCEICKLRMSTEEKLISHKRYHEVRYRCPVCGLTRISRLTVKDHYSAFHTNNQHEHNCPHCSKCFKRQVSWRKHISNVHSHKRVSCGYCNKSYANKDVLKAHLIVQHPREVSAGEITKSHVCEECGKAFKAPSQLKLHSIKHSLSKDYYCIECDKSFKSASILKHHLKTTSTHVSYVDLPLQCQHCDKRFAIRRDLDRHTNRVHLNIKPFQCDQCEKAYVNGWSLNEHRRLIHEGYKRPLKYPCPMCDKVFDRNQVLKGHIRTHTGERPYQCSRCPAQFSQASVLGTHVRLIHLRLTRDGRPKTKHTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00342423;
- 90% Identity
- -
- 80% Identity
- -