Cdum023522.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- Zfa
- Assembly
- GCA_963691665.1
- Location
- OY829528.1:8640530-8666724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.9 2e+02 3.5 6.3 1 19 66 84 66 86 0.95 2 20 0.00026 0.018 16.2 1.1 1 23 93 115 93 115 0.96 3 20 0.25 17 6.8 0.1 3 23 122 143 121 143 0.95 4 20 0.00022 0.015 16.4 1.5 1 23 149 171 149 171 0.99 5 20 0.014 0.95 10.8 0.9 1 23 177 200 177 200 0.96 6 20 0.088 6.1 8.2 0.1 1 23 209 231 209 231 0.98 7 20 2.4e-05 0.0017 19.4 0.7 3 23 239 259 238 259 0.98 8 20 9.1e-05 0.0063 17.6 3.3 1 23 265 287 265 287 0.97 9 20 0.044 3 9.2 0.2 1 20 293 312 293 314 0.90 10 20 0.0011 0.075 14.2 1.4 1 23 553 575 553 575 0.98 11 20 0.018 1.2 10.4 1.0 1 23 582 604 582 604 0.98 12 20 2.6 1.8e+02 3.6 0.4 1 23 608 631 608 631 0.85 13 20 0.00027 0.019 16.1 6.7 1 23 638 661 638 661 0.95 14 20 5.2e-05 0.0036 18.4 0.1 2 23 667 689 666 689 0.95 15 20 0.00023 0.016 16.3 0.3 1 23 702 724 702 724 0.95 16 20 0.00037 0.026 15.7 2.1 1 22 730 751 730 755 0.94 17 20 0.0019 0.13 13.5 1.7 2 23 764 786 763 786 0.96 18 20 0.0012 0.082 14.1 0.1 1 23 792 815 792 815 0.97 19 20 3.1e-06 0.00021 22.2 0.1 1 23 824 846 824 846 0.99 20 20 0.011 0.78 11.0 0.1 1 23 852 875 852 875 0.97
Sequence Information
- Coding Sequence
- ATGGGAGAGAACTTGATCCCGGATCCGGAAGAGGTTCTGCAAATCATGCTAAGAACACACTTCCCAGAGAGTGAAGAGGCAccaacagaggaggaagaacagCTTGAATTAGTTGATCATTATAATAACATTCACAAGAGCAAGGTGACAAACTCACACAGTTACACTTTAGTTAAGGAAGATGGTAGAGTTTTGTACAAATGCTGCACATGTGATAAAACTTACGATAGCAGAAGGAAAATTAGCAGGCATTGTCAAAGTTATACTGAGGAGAGATTTCACTGCAAAATATGTGGCAGAACTTATAAAACAGTCTCCGAGATAATCCGTCATGGCAGAGCTCATGATGGTGCAAAGGTGGCCTGTTCATTTGGGTGCGGCTTCGCTTCTGTCTACTCTGGAGCCCTGAAGAGCCACGAGAATCGTCATAGGCAAGACTTTAAGTATAAATGCgaaacatgtaacaaaagtttcCAAGTGAGGACATGGTATGAACAGCATCAGAACATACATAAGGGTGTGAAACCGTATATCTGTCAAATATGCGGCCTGGCGTTCCATATGGACAGaTACTTGACGTCGCATCGGAACTCTGTTCACCCCAATGCGTCTCCAGTAAACCGATACGTCTGCGTCCAGTGCTCCAAACCCCTCGGGACTATGAAAGCTCTCACGTTGCATTTGAAGGAGCACGGAATAACTTCCAGTTTGCTATGCGACTTGTGTGGCAAATCGGTTTCGAGCTCGGAACAGCTCAAGAAACACAGACTCACACATTCCGGCATTAAACCTTTTGCTTGCACCTCGTGTGACAAGACCTTCGCGAAGAAGTGCAACCTGAAGTTGCACCAGGCCACGCACACGGGCGAGCGCGCGCACGcgtgcggcgcgtgcggcgcgcgCTACACGCAGCGGAGCGCGCTGCTGCGTCACGCACACAGCTATTGTTCCTTGGATCTTAGAATTATGGAGCATTCAGCAGAAATGGGGCCGAATCAGTATTGTTTCGGATGTTTATCCGGGAGGGAGGAAAATCCGatttattctatttattttacaaatccGGCGCTGAAAACCATTTTCCAGACAGACAAATTATATTTATGCTACCTCTGCAAGCGGGCCTTGCAACAAGCAGAACTGTTCATACAAAATGTCCAATGCAACCAACTTCtatttgaaaaccaacataGTTTAAAGGAAACTGTGGTACTCTCGGCCCAAACTCTGATTCAAGCTCCTCACCGCCTCGTCCATACAATCCTTGACAACACGGACTACAGAGCTGACGAGTCAAACGTTGAAGATGTCTCTGTTATCCGTAATTCTCATAAGGAGGTGAAGGTTAAACAGGAGATGAAAGAAGAAAGCGAAGTCTCGGAGGTTGATGCCGATGATGACATTATTGACAATGaTTATCAAGATCCCTATGTAAAAGACGAAGATTTCCCACTAAAGGATTTGCTGAAAAAAGAAATGGTAGTAGAAGAGATAGATGCGAAAAGTCTGAAAAGAAGcctgaaaaaaagaaaatacaaaaaacacaaGAAGCAAGTGCAAGAAGCGCACATCATTGAGACCATCTACATAACGCGTGAGCAGTGCttagaggagcgagagagacaGAAGCTGGAGCGACGATATGTCGTCTCAACTTACAAGTGTGAAGACTGCGTCAAaggatttaattttaaagagAGCTATGATAAACATTTGGAGAAACACAGTGTGGCTAACGGTGATTATCAATGTGAAATCTGTAAGCTGAGAATGAGTACGGAAGAAAAGTTGATCAGCCACAAAAGATACCATGAAGTACGTTACCGCTGTCCCGTGTGCAGCCTGACGCGCATCAGTCGCCTGACCGTCAAAGACCACTACTCGGCGTTCCACACCACCAACCAGTACAAGCACAGCTGTCCGCATTGCTCTAAATGTTTCAAACGGCAAGTATCTTGGCGGAAGCACATATCGAATGTGCACTCACACAAGCGCGTGACGTGCGGCTACTGCGGCAAGAGCTACGCCAATAAGGATGTACTTAAAGCTCATTTGATAGTTCAGCATCCTAAAGAAGTATCGGCGGGCGAGATAACGAAATCTCACATCTGTCAAGATTGCGGTATGGCGTTCAAAGCACCGTCTCAGCTCAGGATACATAGCATCAAGCACTCACTCAGCAAAGACTACTACTGCGTTGAGTGCGACAAGAGTTTCAAGTCGGCATCAATACTAAAGCATCATTTGAAAACTACGTCCACGCACGTGAGCTACGTAGAACTACCcCTGCAGTGTGAACACTGCGAAAAGCGGTTCGCGATCCGACGCGACTTAGACAGACACACTAACAGGGTGCATTTGAACATAAAACCGTTCCAATGCGACCAGTGTGAAAAgGCGTACGTGAACGGCTGGTCTCTGAACGAGCACCGGCGGCTCGTGCATGAGGGGTACAAACGACCGCTGAAGTATCCCTGCCCTATGTGTGATAAAGTATTTGACcgcaATCAGGTTTTGAAAGGCCACATCCGCACGCATACAGGCGAGCGCCCCTACCAGTGCAGCCGCTGCCCCGCGCAGTTCAGCCAGGCCAGCATCCTGGCCACTCATGTGCGCCTCATACACCTGCGCCTGACCAGGGATGGCCGGCCGAAGACCAAGCCCAGCAAATGA
- Protein Sequence
- MGENLIPDPEEVLQIMLRTHFPESEEAPTEEEEQLELVDHYNNIHKSKVTNSHSYTLVKEDGRVLYKCCTCDKTYDSRRKISRHCQSYTEERFHCKICGRTYKTVSEIIRHGRAHDGAKVACSFGCGFASVYSGALKSHENRHRQDFKYKCETCNKSFQVRTWYEQHQNIHKGVKPYICQICGLAFHMDRYLTSHRNSVHPNASPVNRYVCVQCSKPLGTMKALTLHLKEHGITSSLLCDLCGKSVSSSEQLKKHRLTHSGIKPFACTSCDKTFAKKCNLKLHQATHTGERAHACGACGARYTQRSALLRHAHSYCSLDLRIMEHSAEMGPNQYCFGCLSGREENPIYSIYFTNPALKTIFQTDKLYLCYLCKRALQQAELFIQNVQCNQLLFENQHSLKETVVLSAQTLIQAPHRLVHTILDNTDYRADESNVEDVSVIRNSHKEVKVKQEMKEESEVSEVDADDDIIDNDYQDPYVKDEDFPLKDLLKKEMVVEEIDAKSLKRSLKKRKYKKHKKQVQEAHIIETIYITREQCLEERERQKLERRYVVSTYKCEDCVKGFNFKESYDKHLEKHSVANGDYQCEICKLRMSTEEKLISHKRYHEVRYRCPVCSLTRISRLTVKDHYSAFHTTNQYKHSCPHCSKCFKRQVSWRKHISNVHSHKRVTCGYCGKSYANKDVLKAHLIVQHPKEVSAGEITKSHICQDCGMAFKAPSQLRIHSIKHSLSKDYYCVECDKSFKSASILKHHLKTTSTHVSYVELPLQCEHCEKRFAIRRDLDRHTNRVHLNIKPFQCDQCEKAYVNGWSLNEHRRLVHEGYKRPLKYPCPMCDKVFDRNQVLKGHIRTHTGERPYQCSRCPAQFSQASILATHVRLIHLRLTRDGRPKTKPSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01135021;
- 90% Identity
- -
- 80% Identity
- -