Pcor004668.2
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421853.1:5037473-5046743[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.01 0.66 11.2 0.6 3 23 293 314 292 314 0.96 2 23 0.53 34 5.8 0.2 1 21 696 716 696 717 0.96 3 23 7.3 4.8e+02 2.2 0.3 1 22 759 780 759 782 0.82 4 23 0.0013 0.081 14.1 0.7 3 21 793 811 791 812 0.95 5 23 0.75 48 5.3 0.3 3 23 821 842 819 842 0.91 6 23 0.008 0.52 11.5 0.2 3 23 862 883 860 883 0.96 7 23 0.013 0.82 10.9 2.4 1 23 889 912 889 912 0.92 8 23 0.14 8.9 7.6 0.0 1 23 938 961 938 961 0.90 9 23 0.021 1.3 10.2 3.4 1 23 966 988 966 988 0.97 10 23 0.021 1.3 10.2 0.3 1 23 994 1017 994 1017 0.95 11 23 0.0025 0.16 13.1 1.3 1 23 1030 1052 1030 1052 0.97 12 23 0.00019 0.013 16.6 1.8 1 23 1101 1124 1101 1124 0.97 13 23 0.0042 0.27 12.4 1.8 1 23 1198 1221 1198 1221 0.96 14 23 0.0012 0.078 14.1 2.1 2 23 1246 1268 1245 1268 0.95 15 23 0.095 6.2 8.1 0.1 2 23 1274 1296 1273 1296 0.93 16 23 0.011 0.7 11.1 0.2 1 21 1337 1357 1337 1358 0.95 17 23 0.0013 0.087 14.0 0.6 1 23 1368 1390 1368 1390 0.93 18 23 0.00018 0.012 16.7 0.4 3 23 1485 1506 1484 1506 0.93 19 23 3.6e-07 2.3e-05 25.2 1.4 3 23 1513 1533 1512 1533 0.98 20 23 0.0089 0.57 11.4 0.4 3 23 1556 1576 1554 1577 0.95 21 23 0.1 6.6 8.0 0.0 1 23 1598 1620 1598 1620 0.98 22 23 0.03 1.9 9.7 0.6 1 23 1626 1649 1626 1649 0.95 23 23 0.00028 0.018 16.1 0.4 1 23 1657 1680 1657 1680 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAAGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCTGAACCTCACGTCCTCGCATCAAAAATCAAGGATTGCGTGGCCGTTCAGATAAACGAGAATGACGACCTGCCTACTAATGCCTGCAGAAAATGCGTGGACAATGTCAATAACTGGCATGTATTTAAGACAGTATGTGAAAGGACACAAAACAAACTACTGTCTCTGATTAAAAAAGATGGCAGCCAACTAGAAGAGttgaaaataaaaagtgaaCCGCTGTCAGATGAGGCCTATGATGATGGAGTGGTTATTGATGCAACCTATCAAGAGGAGGCTGCTGGCACCAGCAAAGTGCAGCCCGAAGGCCCACCTATCTTGGCTTCGCTGGGACTCACACCGCGGAGTGATAAGAATTATGTTGATCCTAGGATGGATTGGCACCGGGTCCATGCTATTTTGGACATGGTTCAAGATGATAATGTTATCAACTCGCTGCAGTCTGCTGAAGAATGTGACATACTGCTACAGTCAGATCATGATTCAGACTCTGACATAGAACTGGAATGTGACATTGATGACATATTTGTTGATTGTAAAGATGGATACAAGTTGagaaatcagaaaataatttcAAAGAGACCATTAGTATCTGGTCCTGAAAATTATCCAAAGGGCGTCGAGAGCGAAAAAGACGAGGAAGAAGATGAAGATGATGAATTGATGGAGCCAGCCCAGCAGTACAATAAAGTGCCGAGCATGCCTGAGGTGTCCATAACGGTGATGCGGCCGACGGGCGAGACGCTACACGCGCGGCAGGGCATCCAACAACTAGCCAGCAAGGACTGCCTCGTCTGTGGCCGCGCCTACCGCTACTCGCACAACGCGCGCCGCCACGAACTCACCGCTCATAGCTTTGACAGGTACaccaacaaaataaacaacaaaaaaaccaaAACGCACATGCAACCCAAACTTAGACTCAACCCGTTCAACCCCAAAGCCCGGCTCATGCCCAATCCCATTAACCACAAAATGCAATTCCAAAAACCAATGCCGACTCGCGTCATGCCGTCCAGAATAGTCGCCCCACCGAAACCGCTAGCGATCAAAAACACAAAACCCGTACACAACAATCTACCTTATCCTTTGCGAATAAAAGCACTCAAAGATTTGcaaattaagaaaaaagaaCCACAAATTTTGAAAACTTTGCTGACGTCAAAACCGGAATATTTGGTTTCCGAACCAGCTATTATTAATTCGGGCCCAGAGAGTCCAGAGACTTTAATATCGGAGCCAGAGATCGCCTCATTCCAAGTTGAAACGATCTTGTCGGAACCAGGTTTTGATCAAAACCATGAAGAAGAAGAGGAGGCTGAGGAATCCcttaatcaaaatcaaaattacgaTACTGTGGACATGGAGTCAGATCATGAAATCGAAATCGCCCGTCAAAAAGAAAACGATGGTGAAATGGATGAAAATCAGGTTGAACACGATGAAGATGAAATGCAACATGACAATGAAAATATGGATAATACAGAAGGCGAAATGAGCGATAATGAGAATGGAAATCAAGAGGAGGATGATGAACAAGGTGAAAGTCAGGGTGATATGATAATAGATGAGCACAATGAAGCTCAAGGCGAAGACGGTGAAGGAGACAACGATGAAGACAACGGAGATAGAGACGACGACCAAGATGGCAATGAAGAAAATGAGAACGACGAAGATGAAGATCTTCCTCCAGGGTTGGCACCTGTTGTTGAGATAAACGAGGACATGCAAACTAACTCGTATAATAGTGAACAAAAtgaagaagaagaggaagaacTCGATGAATCAGCTGCCAATGACAACATTGATGACGACGTCAAGGAGCTTGACCCTGATAAGATTTATGTCACGAAAACTCAGAGAGATTTCATTCAGAAATATAGGGACATTATTCAACAGATTAACACTAAACGCTGTCTCTGTTGCGATAGGGAACATCCTCGTAGAAAAGCTGTTATTCAACATCTCCAGAAAAATGGACACAAAGTACCAAAACACACATGTTATAATTGCGTTGTAACTTTTGGTCACATTGGCGCATTGCTTAGCCATATGCGGGCCAATGTTTGCACAGATCTGTGGAAAATAATCTATAATGAAAACGGAATAACCGACGATTTGGTGATGGAAGATGAACCCAAAGATAACAAAGTGCAATATAAGGATATTTTTAATGCCAGATCGTATGCATGCAAACTGTGTCCGGCTAAGTTCCAATTGAAACAGTTTATTATGAAACACGTTCTGGATGTTCATGAAGATGGTCAGTCCAGGGTGCCAATGGCTTGCGTACATTGCGGGTCGAGGTTCAAAGACAAATCCTTATGGAAAAGACACATTCGGAACGGAGAATGTACAGTTTACATTGCATGCGATCTTTGCTCTGAAAAATTCGTTAACATGCAAGATTTCAACGATCATGCTTTACATGTGCATGCTGGCAGTTTCGACCCCGATAATCAAAACAAATGCATCGACGGTCGTCCAACAGATTGTCCTCTATGCGGTAAAAAGAACAGCAACTATCCAAATTTGGTAAAACATATAAAATCAGCCCATAATGAAGACAAGCCGCATTACTGTCAACATTGTGATGCCAAATTTGAGCAAACTCCTGATCTGAACAAACATATTTATGCTCAGCATTCTGATAAAGTGATGGGTGCACAGGCCATGGAACCTGATATGTCAATCATCAAGGAAGAAGCCGAAGAGTATCATTATTCCTGCACAGAATGTAACGCTATATTCGAAACTGTCGACGCCTGGACGGACCATCAGGTAGCTGAACACAATCAAGTCGCCCACCACTGCGACCAGTGTGAAAAGAAGTTCCTGCGGCCGTCAGAGCTAGCAGAACACAAAAACACTCATTTGAGGGTTAAATTCTATCCTTGCAGTGTTTGCTCTAATTCATACAGTACTCCTCAAAAGCTATCTGAGCACGTGCAACAGTCCCACCCAGGTGCCTCGGCCTACGCCGCAGCTGAAACCGAGTTCTTCTGCGATATCTGCATTCGGTCATTCAAAAGCCGTCAAGCTTACTCTAATCATATGCGCATCCACGCCAAAGTGCCGACCACTAACAGGAAACCTGGCGAGCCAAAAGGCTTCGCACCACAAATTATTGGCAAGCCTATCCGCCAGTTCCCTATGATCCAGCCGGGGTTGGTCTCCTTCAAGCCCAACTGTAATGTTCCTAATGCTCCTTATTCATGTGACATTTGCGGCAAAGGTTTTATGCATAAGAAGAATATTTGGAAACACAAGAAGGTGTTGCATGCGGACCTCCTGAATGAACGAAATGACAGCGAAGACAACACTATGCAGGCGTCCACCGAAGAAGACGAATACAATGTTGACGAAAACGGCACTGCATTGTCAACACCACAGTTCAACAGTTTTAATTTCTCGAATTTTGCTAATAATgtgcaacaacaacaacaacaacaacagcagcAGCATCAACAACAATCGACGCCAACAAATGATGCCTTGCCTTTCTCCTGCGAACTTTGTTATAAACGGTTCCCACTTAAAACAAGTTTGTGGAAACACAAACGCGCCAAACATGGCATCATTAACGCGAGTGCGACCGGCAATCCCGAGAATCAAGCCCAGCCATCTTCGGAAGGTGGCAGGTCTAGTTGCACGATTTGCAAGATTACATTCTCTGACAAAAAGTCGTATTATCGCCATAGGAAAAACGTGCACAAATCCACCGCACAAATGTGTAAGATTTGTGGTAAACCACTTAACTCAACTTTAGAGTTGTATGAGCACTTGAAGGCTGCTCACGCCCGAGAACTACTGGGATACAATGCCAATCAAGGCACAAGTAAAGCACAAGAGGAGGTAAAAATAGAATATGAGCCCGAACCTGAAATTAATGATCCAAGCGCAGAGTATCAAGCGCGTTACCCATGTGATACATGTGGTAAACAATTCGTAGGGCTTCTGGCGTTGCAGAACCATCAATGTATAAACCAATCCGCTGCAGAGCCTCAAACTTTTGACTGCGAAATATGCCACAAGAGTTACACTTCAATAGCTGCGTTGAAGAGCCATCGCGGCTGGCATTTGCGCTCTCCTGACGGCAAGGCTGCAGCGAATAACAGCGGCCTATGGATGCCACAGCACAAAGTAACGAGCAAAGTCAGTAAGCATGAAGTCGTAGATGCCTCACAACTAGCGAGAGTCACCCACTCCACGCCCACcgcaactactactactacaactAAACGGCGACTACCACCAGAAGTCGAGGTAACCGTCGTCAATCCAAATAAGAAAATGAGATCAGATGATTCCATGGAACTTGAACAGCAGAATAGTTTAACCGGAACTCTGGAAGATAGATTTTGCACAATTTGCGACAAAGAATTCACCAAACGTGCGGCTTACCAGCGCCACATGGACGAAGTGCACCAGCCCAACTCTGTGTTCTGCCCAGTGTGTGATAAGAGCTTCACTCGGAAATCGACCCTGCTCGTCCATATGAAGAAACATTACGGTGGCGACGGAGAAGGTAGTTCGAGCGCGATCGGTCAAACGGCTGAGGATGATATGTACGGGTGCGATCAGTGCGGGACTCAGTACAACAGCGAGGCTGCGTTGCGAGCGCACCGAGCGCGACACCATGCGGACGATTCTAACGAGTCTGAAGACGACGGCAACGTGCCAGTAGCCCAGCCCGGAGAGTTCACTTGTGGCCAGTGCGGCGACGGCGTCGCCACGCCACGCGACCTGATCGCCCACCGATCCATGCACGCGACACCGACCAAATTCTTCTGCAACATCTGCAAAGTTTACTTTGCACGCGCTCTGGATCTCTCCTCCCACACTCGGGCAAGGCATTCCGACAACGAAAAAGTCTTCTTCCCCTGTGCCATGTGTGATCGCTTCTACATGAATAAGAAAAGCTTACAGCGACACATTGAGATGGCCCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRSELLPIFPTTSSDDSEPHVLASKIKDCVAVQINENDDLPTNACRKCVDNVNNWHVFKTVCERTQNKLLSLIKKDGSQLEELKIKSEPLSDEAYDDGVVIDATYQEEAAGTSKVQPEGPPILASLGLTPRSDKNYVDPRMDWHRVHAILDMVQDDNVINSLQSAEECDILLQSDHDSDSDIELECDIDDIFVDCKDGYKLRNQKIISKRPLVSGPENYPKGVESEKDEEEDEDDELMEPAQQYNKVPSMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKINNKKTKTHMQPKLRLNPFNPKARLMPNPINHKMQFQKPMPTRVMPSRIVAPPKPLAIKNTKPVHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEYLVSEPAIINSGPESPETLISEPEIASFQVETILSEPGFDQNHEEEEEAEESLNQNQNYDTVDMESDHEIEIARQKENDGEMDENQVEHDEDEMQHDNENMDNTEGEMSDNENGNQEEDDEQGESQGDMIIDEHNEAQGEDGEGDNDEDNGDRDDDQDGNEENENDEDEDLPPGLAPVVEINEDMQTNSYNSEQNEEEEEELDESAANDNIDDDVKELDPDKIYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRANVCTDLWKIIYNENGITDDLVMEDEPKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPMACVHCGSRFKDKSLWKRHIRNGECTVYIACDLCSEKFVNMQDFNDHALHVHAGSFDPDNQNKCIDGRPTDCPLCGKKNSNYPNLVKHIKSAHNEDKPHYCQHCDAKFEQTPDLNKHIYAQHSDKVMGAQAMEPDMSIIKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQSHPGASAYAAAETEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIIGKPIRQFPMIQPGLVSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNERNDSEDNTMQASTEEDEYNVDENGTALSTPQFNSFNFSNFANNVQQQQQQQQQQHQQQSTPTNDALPFSCELCYKRFPLKTSLWKHKRAKHGIINASATGNPENQAQPSSEGGRSSCTICKITFSDKKSYYRHRKNVHKSTAQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGTSKAQEEVKIEYEPEPEINDPSAEYQARYPCDTCGKQFVGLLALQNHQCINQSAAEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDASQLARVTHSTPTATTTTTTKRRLPPEVEVTVVNPNKKMRSDDSMELEQQNSLTGTLEDRFCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSSSAIGQTAEDDMYGCDQCGTQYNSEAALRAHRARHHADDSNESEDDGNVPVAQPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010410;
- 90% Identity
- -
- 80% Identity
- -