Pcor019096.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421869.1:11034776-11035234[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-11 5.8e-08 33.0 0.0 1 38 15 52 15 58 0.89 2 2 5.5 5.4e+03 -2.1 0.0 17 25 112 120 111 121 0.86
Sequence Information
- Coding Sequence
- ATGTCGGAGTCAAAACCTAGAAAAGAAAGAGGTAGTACATGGGATGAAGACAGTTTAAGACGTGCCATGGAagcagtacaaaataataaacttaatacAAATGCTGCAGCGATAAAGTTCAATATTCCAAGACGCACCCTTAGAAACCATATATTGAGCGGTAACAGTGCTAAAATTATTGGGAAGACGACTATTCTCACAAAACAATTAGAAGAAGATTTATCGCAGCGAATCATACGGTTTGCAAAACTGGGTATACCACTTACGCCTAAATTTATCAGAAAACAAGCCTTTTTATTTTGTGAGAGGTTTAAAATCAAACACTCGTTCAATATGTCAACTAGAATGGCTGGACGCAAATGGCTTAAAATGTTAATGAATCCAGCTAGAGCTCAGAAAATGAATAAGCCTATTGTTAAACACCACTTTGAAGAAGTGAAGAAACTCTACAGGAtgtaa
- Protein Sequence
- MSESKPRKERGSTWDEDSLRRAMEAVQNNKLNTNAAAIKFNIPRRTLRNHILSGNSAKIIGKTTILTKQLEEDLSQRIIRFAKLGIPLTPKFIRKQAFLFCERFKIKHSFNMSTRMAGRKWLKMLMNPARAQKMNKPIVKHHFEEVKKLYRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01338634; iTF_01436954; iTF_01178493; iTF_00248000;
- 90% Identity
- -
- 80% Identity
- -