Paur031940.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352315.1:3028645-3047056[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.29 7.2e+03 -1.4 0.0 42 52 10 20 7 21 0.90 2 24 0.011 2.8e+02 3.1 0.1 42 52 33 43 29 45 0.92 3 24 0.011 2.8e+02 3.1 0.1 42 52 56 66 52 68 0.92 4 24 0.011 2.8e+02 3.1 0.1 42 52 79 89 75 91 0.92 5 24 0.011 2.8e+02 3.1 0.1 42 52 102 112 98 114 0.92 6 24 0.011 2.8e+02 3.1 0.1 42 52 125 135 121 137 0.92 7 24 0.011 2.8e+02 3.1 0.1 42 52 148 158 144 160 0.92 8 24 0.011 2.8e+02 3.1 0.1 42 52 171 181 167 183 0.92 9 24 0.011 2.8e+02 3.1 0.1 42 52 194 204 190 206 0.92 10 24 0.011 2.8e+02 3.1 0.1 42 52 217 227 213 229 0.92 11 24 0.011 2.8e+02 3.1 0.1 42 52 240 250 236 252 0.92 12 24 0.011 2.8e+02 3.1 0.1 42 52 263 273 259 275 0.92 13 24 0.011 2.8e+02 3.1 0.1 42 52 286 296 282 298 0.92 14 24 0.011 2.8e+02 3.1 0.1 42 52 309 319 305 321 0.92 15 24 0.011 2.8e+02 3.1 0.1 42 52 332 342 328 344 0.92 16 24 0.011 2.8e+02 3.1 0.1 42 52 355 365 351 367 0.92 17 24 0.011 2.8e+02 3.1 0.1 42 52 378 388 374 390 0.92 18 24 0.011 2.8e+02 3.1 0.1 42 52 401 411 397 413 0.92 19 24 0.011 2.8e+02 3.1 0.1 42 52 424 434 420 436 0.92 20 24 0.011 2.8e+02 3.1 0.1 42 52 447 457 443 459 0.92 21 24 0.011 2.8e+02 3.1 0.1 42 52 470 480 466 482 0.92 22 24 0.011 2.8e+02 3.1 0.1 42 52 493 503 489 505 0.92 23 24 0.011 2.8e+02 3.1 0.1 42 52 516 526 512 528 0.92 24 24 0.67 1.7e+04 -2.5 0.0 16 26 618 628 617 629 0.83
Sequence Information
- Coding Sequence
- ATGGAGCCTCTAGCGGCGCGCGGCTGGAGAGACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTCAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTTTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGAAGCCGGTAGAACGTTGCCAGTGAACGAAGACGCGTCTTTGGATCCCAGCATAGCGAACCTAGCGCCGGGGAGACCGGTGCAGGAACGATTAGAACACTTGCTGAGGCTGTTGAGAATCAATGCCACGGCACATGTAGTTTCAGAGTGGCCAGCGCCGGACGAGACGAGCCGGTGGATGTCAGACAACTCGGACAACTCCATATACCAAAGAGTGCCTATATCTTACCTGCAGAAGGTGAACAGTATAATCCGAAGCCGCAGCGGTAGTGAAACAGCCGTGACATTCCTACAACTACCTGAGCCGCCTCGATTGACGGCTCAACTTAGTGATACTGACAAAACTATATGTGGACAATATCTACAGGTACTAGACGAATTGACGAAAGAGCTGTCTCCGACGATACTTGTACGAGGATTGAAGCCCGTCACCTCCACTGCTCTATAA
- Protein Sequence
- MEPLAARGWRDLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLEAGRTLPVNEDASLDPSIANLAPGRPVQERLEHLLRLLRINATAHVVSEWPAPDETSRWMSDNSDNSIYQRVPISYLQKVNSIIRSRSGSETAVTFLQLPEPPRLTAQLSDTDKTICGQYLQVLDELTKELSPTILVRGLKPVTSTAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -