Basic Information

Insect: Pammene aurita
Gene Symbol: -
Assembly: GCA_947086415.1
Location: OX352315.1:3047088-3055397[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00032 7.9 8.1 0.0 32 52 81 100 79 102 0.89

2 17 0.0076 1.9e+02 3.7 0.1 42 52 113 123 109 125 0.92

3 17 0.0076 1.9e+02 3.7 0.1 42 52 136 146 132 148 0.92

4 17 0.0076 1.9e+02 3.7 0.1 42 52 159 169 155 171 0.92

5 17 0.0076 1.9e+02 3.7 0.1 42 52 182 192 178 194 0.92

6 17 0.0076 1.9e+02 3.7 0.1 42 52 205 215 201 217 0.92

7 17 0.0076 1.9e+02 3.7 0.1 42 52 228 238 224 240 0.92

8 17 0.0076 1.9e+02 3.7 0.1 42 52 251 261 247 263 0.92

9 17 0.0076 1.9e+02 3.7 0.1 42 52 274 284 270 286 0.92

10 17 0.0076 1.9e+02 3.7 0.1 42 52 297 307 293 309 0.92

11 17 0.0076 1.9e+02 3.7 0.1 42 52 320 330 316 332 0.92

12 17 0.0076 1.9e+02 3.7 0.1 42 52 343 353 339 355 0.92

13 17 0.0076 1.9e+02 3.7 0.1 42 52 366 376 362 378 0.92

14 17 0.0076 1.9e+02 3.7 0.1 42 52 389 399 385 401 0.92

15 17 0.0076 1.9e+02 3.7 0.1 42 52 412 422 408 424 0.92

16 17 0.0076 1.9e+02 3.7 0.1 42 52 435 445 431 447 0.92

17 17 0.0076 1.9e+02 3.7 0.1 42 52 458 468 454 470 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00032	7.9	8.1	0.0	32	52	81	100	79	102	0.89
2	17	0.0076	1.9e+02	3.7	0.1	42	52	113	123	109	125	0.92
3	17	0.0076	1.9e+02	3.7	0.1	42	52	136	146	132	148	0.92
4	17	0.0076	1.9e+02	3.7	0.1	42	52	159	169	155	171	0.92
5	17	0.0076	1.9e+02	3.7	0.1	42	52	182	192	178	194	0.92
6	17	0.0076	1.9e+02	3.7	0.1	42	52	205	215	201	217	0.92
7	17	0.0076	1.9e+02	3.7	0.1	42	52	228	238	224	240	0.92
8	17	0.0076	1.9e+02	3.7	0.1	42	52	251	261	247	263	0.92
9	17	0.0076	1.9e+02	3.7	0.1	42	52	274	284	270	286	0.92
10	17	0.0076	1.9e+02	3.7	0.1	42	52	297	307	293	309	0.92
11	17	0.0076	1.9e+02	3.7	0.1	42	52	320	330	316	332	0.92
12	17	0.0076	1.9e+02	3.7	0.1	42	52	343	353	339	355	0.92
13	17	0.0076	1.9e+02	3.7	0.1	42	52	366	376	362	378	0.92
14	17	0.0076	1.9e+02	3.7	0.1	42	52	389	399	385	401	0.92
15	17	0.0076	1.9e+02	3.7	0.1	42	52	412	422	408	424	0.92
16	17	0.0076	1.9e+02	3.7	0.1	42	52	435	445	431	447	0.92
17	17	0.0076	1.9e+02	3.7	0.1	42	52	458	468	454	470	0.92

Sequence Information

Coding Sequence: ATGACTCACGCGGCCGCCTCTGACTTGGACGCGACCGGTTTGAACAAAACGTTATCGCTCGAAGCGGGCGCGCAACAGCTGACTCCTAATGTAAACAATGAGGATGTTGTATTGCATAGCAATAACAGCGGTGTTGAAGAGAAATCAGCGTCGTTGAAATACATCGACGTGTGGCTTGTGGAGCCTCTAGCGGCGCACGGCTGCCTCACGGTCCGCGCGCTGTTCGCGCTGCAGCTGAGCGCGGTGGTGCGCTCGGCGCGCGGCTGGAGACACCTGGCGCTCAGGGTGTTCAGCAAACCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAACCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAACCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAACCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAACCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAACCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAACCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGAGGGTGTTCAGCAAGCCGGAGCCCGAACAGGGCGTGCTGGCGGCGCGCGGCTGGAGACACCTGGCGCTGCGGGTGTTCAGCAAACCGGAGCCCGAACAGGGCGTGCTGGGTGAGTAG
Protein Sequence: MTHAAASDLDATGLNKTLSLEAGAQQLTPNVNNEDVVLHSNNSGVEEKSASLKYIDVWLVEPLAAHGCLTVRALFALQLSAVVRSARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLAARGWRHLALRVFSKPEPEQGVLGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -