Paur017642.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352299.1:26318894-26329826[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.013 1.4 10.9 1.0 3 23 211 232 210 232 0.96 2 21 0.51 57 5.9 0.2 1 21 616 636 616 637 0.96 3 21 0.002 0.22 13.5 0.6 3 21 711 729 709 730 0.95 4 21 0.43 48 6.1 0.1 3 23 739 760 737 760 0.91 5 21 0.0018 0.2 13.6 0.8 1 23 807 830 807 830 0.92 6 21 0.13 15 7.7 0.0 1 23 856 879 856 879 0.90 7 21 0.02 2.2 10.3 3.4 1 23 884 906 884 906 0.97 8 21 0.018 2 10.4 0.2 1 23 912 935 912 935 0.95 9 21 0.0024 0.26 13.2 1.3 1 23 948 970 948 970 0.97 10 21 0.0015 0.17 13.8 4.0 1 23 1019 1042 1019 1042 0.96 11 21 0.0072 0.8 11.7 1.8 1 23 1113 1136 1113 1136 0.96 12 21 0.0012 0.13 14.2 2.1 2 23 1163 1185 1162 1185 0.95 13 21 0.092 10 8.2 0.0 3 23 1192 1213 1190 1213 0.93 14 21 0.01 1.2 11.2 0.2 1 21 1257 1277 1257 1278 0.95 15 21 0.0013 0.14 14.0 0.6 1 23 1288 1310 1288 1310 0.93 16 21 0.00012 0.013 17.3 0.3 2 23 1405 1427 1405 1427 0.93 17 21 3.5e-07 3.9e-05 25.3 1.4 3 23 1434 1454 1433 1454 0.98 18 21 0.0098 1.1 11.3 0.5 1 23 1474 1496 1474 1497 0.94 19 21 0.12 13 7.8 0.0 1 23 1518 1540 1518 1540 0.97 20 21 0.014 1.5 10.8 1.0 1 23 1546 1569 1546 1569 0.95 21 21 0.00095 0.11 14.5 0.4 1 23 1577 1600 1577 1600 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGGGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAGCCTATCGTCCTCGCATCGAAAATCAAGAATTGCGTGGCCGTACAAATAAATGAGGATGACGGCCTGCCATCGAATGCCTGCAGGAAATGCGTGGACAACGTTAATAACTGGCACATATTTAAGTCAGTATGTGAAAGGACACAAAACAAACTACAGTCTCTGATTAAAAAAGATGGCAGCCAACTAGAAGAGGTGAATATAAAAAGTGAACCATTGTCTGATGAGGCCTATGATGATGGAGTGGTTATTGATGGAGGTTATAATGAGGGCGCAAGTAGCAGTAAGGCGCTACCCGAGGGCCCACCGATCTTGGCTTCGCTGGGGCTCACACCGCGGAGTGATAAGGGTGTCGAGAGCGAAAAAGACGAAGAAGAGGACGAAGATGAAGATATGAGTATGTTAGAAGAGGTCCAGCAGCAGCAGCAGTATACCAAAGCGGTGCCCAACATGCCGGAGGTGTCCATCACCGTCATGCGGCCCACCGGTGAAACCCTGCACGCTCGCCAGGGCATCCAGCAGCTCGCCTCCAAAGACTGCCTCGTGTGCGGCCGCGCCTACAGGTACTCCCACAATGCGCGCCGACACGAGCTCACATCACACAGCTTCGACAGATACACTAACAAAATTAACCCCCCTAAAAAACCCAAGACCCACCTACAACCCAAACTCAGACTCAACCCGTTCAACCCCAAAGCGCGACTCATGCCCAACCCCATCAGTCACAAGCAGTTCCAAAGGCCGATGCCCACTAGAGTCATGCCTTCGCGCGTCGTCGCTCCGCCGAAACCTATACCGATCAAGAACGCGAAACCCATTCATAATAACTTACCGTACCCGTTGCGTATAAAAGCACTTAAAGATCTGCAAATCAAGAAGAAGGAACCGCAAATCTTGAAGACCCTCCTCACGGCTAAACCCGAGCTGCTGGTCTCGGAACCCGAAATTATAAACTCGGGCCCAGAAAGCCCGGAAACATTAATATCGGAGCCTGAGATAGCATCATTCCAAGTTGAAACTATTCTGGGTGAACCTGGTTACGATCAAAACCAGGAGGAGGAGGAGGATGCCGATGAATCCCCGAATCAGAATCAACATTATGACACAGTCGATATGGAATCTGACAATGAGATTGAAATCGCTCGTCAACAAGAAAATGAGGCTGAAATCGATGAGAACCAAGAAGAACATGATGGAGATGACACTATGCAAAATGATACTGACCAGATGGAAGGCGTGGAAGGTGACATAAGTGAGAACGAGCAAGGACAACAAGAGGAAGATGACGAACATGACGGCAGCCAGGGAGATATCACAATAGAAGAGCAAAACGATATCCAAGCTGAGGCCGAGGGAGAGAACGGTGACAGTAACGGAGATAGAGAGGAGGAACAGGAAGACGGCAACGACGCCGAGGATAACGAAAATGAGGAGGACGAAGACCTCCCGCCAGCTCTAGCGCCCGTTGTAGAAATCAACGAAGATATGCAAAATAATTCATACAACAGTGGACAAAACGGAGACGAGGAGGAAGCTGATGAATCCGCTGCCAACGAAACCATCGACGAAGACGCTAAGGAATATGACCCCGACAAGATATACGTCACCAAAACGCAGAGAGACTTCATCAACAAATACAGGGACGTCATACAACAGATAAACACTAAAACATGTCTTTGCTGCAACAAAGAGCATCCGCGCAGAAAAGCTGTCATACAGCACTTGCAGAAAAATGGACACAAAGTACCCAAACACACATGCTATAACTGTGTTGTAACTTTTGGTCATATTGGCGCATTGCTCAGTCACATGAGAGCTAACGTTTGTACAGACTTGTGGAAGGTTATCTACAATGAGGAGGGAATCACCGACGACCTGGTCATACAACCCAAAGGCAACAAGGTCCAGTACAAGGATATTTTCAATGCTAGATCGTATGCATGTAAACTGTGCCCAGCTAAATTCCAACTTAAACAGTTTATACTGAAACACGTTCTGGATGTTCACGAGGACGGCCAGTCCAGAATTCAAATGGCCTGCGTACACTGCGGATCCAGGTTCAAAGACAGATCCTTGTGGAAGAGACACATTCGAAACGGGGAGTGTACAGTTTACATCGCATGCGATTTATGCCCTGAGAAATTCGCCAATATTCAAGACTTTAACGACCACGCGCTGCATGTCCACGCCGGCAGCTTCGATCCCGATAATCAGAAAAATTGTATAGACGGCCGTCCCACGGACTGTCCTCTGTGCGGAAAGAAACACCCCAACTACCCCATCTTGGTGAAACATTTGAAGGCCGCTCACAATGAGGACAGGCCTCATTACTGCCAGAATTGTGACGCCAAATTTGAAACCAGCGTCGACCTAAACAAGCACATCTACGCCGAACACTCCGATAAAGTGTTAGGAGCACAACCCATTGAGCCTGACATGTCGCTCGTCAAGGAAGAAGCGGAGGAATACCATTACTCGTGTACAGAATGCAACGCCATATTCGAAACTGTGGATGCCTGGACGGATCACCAAGTCGCTGAACACAATCAAGTCGCTCACCACTGCGACCAGTGTGAAAAGAAGTTCTTGCGCCCATCCGAGCTAGCGGAACACAAAAATACGCATTTGAGGGTGAAGTTCTATCCCTGCAGCGTTTGCTCCAACTCCTACAGCACGCCCCAGAAGCTGTCTGAGCACGTGCAGCAGGCTCACCCTGGAGCCGCCGCGATAGCCGCCGCCGATACCGAATTCTTTTGTGAAATTTGCATTAGGTCCTTCAAAAGTCGCCAGGCTTATTCCAACCACATGCGTATCCACGCTAAAGTTCCTACCACTAACAGAAAACCTGGTGAATCGAAAGGATTCGCTCCGCAGATAATTGGGAAGCCGATCAAGCAGTTCCCCATGATCCAAGCAGGCTTTGCGGCTTATAAACCCAACATCAACGTTCCGAACGCCCCATACTGCTGCGACATATGCGGCAAGGGCTTCATGCACAAGAAAAATATATGGAAACATAAGAAAGTTCTGCACGCGGACATCATCAATGAGAGGAACGACAGCGAGGAAAACACCATGCAAGCGTCCACGGAAGAGGAGGAATATAATAATGTTGACGAAAATGGCATCGCGTTGTCTACGCCACAGTTCAACAGCTTCAACTTTTCAAACTTTGCTAACAATGCGCAACAACACCAACCGGTACAACAAACTCCGCCGGCGGAACCCGCAGACGCCCTACCTTTCTCGTGTGAACTTTGCTTTAAACGGTTCCCGCTAAGAACAAGTCTCTGGAAGCATAAACGCGCAAAACACGGCATCATCAATGCGAGCGTCTCCGGCAACCCTGAAAACCAGGCGCCACCCTCTCAACCCTCCGAAGGTGGCAGATCCAGTTGCACCATTTGTAAGATTACATTCTCTGATAAAAAGTCGTACTATCGCCACAGAAAGAACGTGCACAAATCCTCGGCACAAATATGTAAAATCTGCGGAAAACCAGTGAACTCCACGTTGGAGCTATACGAGCACTTGAAGGCCGCGCACGCTCGGGAATTACTAGGATATAACGCTAACCAAGGCACAAGTAAAGCACAAGATATATCTCAGGAAGCTGAAGTAAAATATGAAGTCGAACCCGAAATCGCAGACCCAAGCGCAGAGTACCAAGCTCGGTACCCGTGTGACACATGTGGAAAACAATTCGTGGGTCTTCTCGCGCTACAGAACCACCAGTGTATAAATCAAAGCGCTTCGGAACCACAGACTTTCGATTGTGAGATCTGCCATAAGAGTTACACATCGATAGCCGCGTTGAAGAGTCATCGTGGCTGGCATCTTCGCTCTCCTGACGGCAAGGCCGCCGCCAACAACAGCGGCCTCTGGATGCCTCAGCACAAAGTCACTAGCAAGGTTAGCAAGCACGAGGTCGTCGATCCCTCCCAGCTCGCACGAGTCACTCACTCCACCCCCACCGCGACCGCCACGACCGCCACGACCAAAAGAAGACTGCCACCCGAAGTCGAAGTCACCGTCGTCAATCCTAACAAAAAATTAAGGTCCGACGATTCTATGGAGCTCGATCCGCAGAACAGTATGCCCGGCGCCTTAGAAGACAGGTACTGTACCATTTGTGACAAAGAGTTCACTAAACGCGCGGCATATCAGCGCCACATGGATGAAGTTCACCAGCCGAATTCAGTGTTCTGTCCCGTGTGCGACAAGAGCTTCACGCGTAAGTCTACTCTGCTCGTGCATATGAAGAAGCATTACGGAGGTGACGGCGAGGGCAGCACGAGTGGGATAGGACAAGTGGAGGACGAAGGGTTCGCGTGCGACGTTTGCGGCAACCAGTTCAACAGCGACAACGCGTTGCGAGCTCACAGGGCGCGGCACCACGCCGAGGAAGAGGAGGAATCCGACGACGACGGCCACGTGCCCGTAGCGCAGCCCGGCGAGTTCACGTGCGGCATGTGCGGCGACGGAGTGGCAACGCCGCGCGACCTCATCGCGCACCGCGCCATGCACTCCACACCCACCAAATTTTTCTGCAACATTTGCAAAGTGTACTTCACGCGAGCGCTGGACCTGTCCTCGCATACCCGCGCGAGGCACGCCGACAACGAAAAGGTTTACTTCCCCTGTGCCATGTGTGAACGCTTCTATATGAACAAGAAGAGCTTACAGCGGCACATCGAGATGGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPIVLASKIKNCVAVQINEDDGLPSNACRKCVDNVNNWHIFKSVCERTQNKLQSLIKKDGSQLEEVNIKSEPLSDEAYDDGVVIDGGYNEGASSSKALPEGPPILASLGLTPRSDKGVESEKDEEEDEDEDMSMLEEVQQQQQYTKAVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTSHSFDRYTNKINPPKKPKTHLQPKLRLNPFNPKARLMPNPISHKQFQRPMPTRVMPSRVVAPPKPIPIKNAKPIHNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPELLVSEPEIINSGPESPETLISEPEIASFQVETILGEPGYDQNQEEEEDADESPNQNQHYDTVDMESDNEIEIARQQENEAEIDENQEEHDGDDTMQNDTDQMEGVEGDISENEQGQQEEDDEHDGSQGDITIEEQNDIQAEAEGENGDSNGDREEEQEDGNDAEDNENEEDEDLPPALAPVVEINEDMQNNSYNSGQNGDEEEADESAANETIDEDAKEYDPDKIYVTKTQRDFINKYRDVIQQINTKTCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRANVCTDLWKVIYNEEGITDDLVIQPKGNKVQYKDIFNARSYACKLCPAKFQLKQFILKHVLDVHEDGQSRIQMACVHCGSRFKDRSLWKRHIRNGECTVYIACDLCPEKFANIQDFNDHALHVHAGSFDPDNQKNCIDGRPTDCPLCGKKHPNYPILVKHLKAAHNEDRPHYCQNCDAKFETSVDLNKHIYAEHSDKVLGAQPIEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQAHPGAAAIAAADTEFFCEICIRSFKSRQAYSNHMRIHAKVPTTNRKPGESKGFAPQIIGKPIKQFPMIQAGFAAYKPNINVPNAPYCCDICGKGFMHKKNIWKHKKVLHADIINERNDSEENTMQASTEEEEYNNVDENGIALSTPQFNSFNFSNFANNAQQHQPVQQTPPAEPADALPFSCELCFKRFPLRTSLWKHKRAKHGIINASVSGNPENQAPPSQPSEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQICKICGKPVNSTLELYEHLKAAHARELLGYNANQGTSKAQDISQEAEVKYEVEPEIADPSAEYQARYPCDTCGKQFVGLLALQNHQCINQSASEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVTHSTPTATATTATTKRRLPPEVEVTVVNPNKKLRSDDSMELDPQNSMPGALEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSTSGIGQVEDEGFACDVCGNQFNSDNALRAHRARHHAEEEEESDDDGHVPVAQPGEFTCGMCGDGVATPRDLIAHRAMHSTPTKFFCNICKVYFTRALDLSSHTRARHADNEKVYFPCAMCERFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010410;
- 90% Identity
- -
- 80% Identity
- -