Basic Information

Insect: Pammene aurita
Gene Symbol: BCL11B
Assembly: GCA_947086415.1
Location: OX352313.1:13353265-13354845[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.56 62 5.7 6.1 1 23 52 77 52 77 0.73

2 15 2.3e-06 0.00025 22.7 2.6 1 23 83 105 83 105 0.96

3 15 3.9e-06 0.00044 22.0 1.1 1 23 111 133 111 133 0.98

4 15 1.3e-06 0.00015 23.4 4.8 1 23 139 161 139 161 0.98

5 15 0.00017 0.019 16.8 0.9 1 23 187 209 187 209 0.98

6 15 0.00032 0.036 15.9 2.5 1 23 215 237 215 237 0.94

7 15 1.1e-06 0.00012 23.7 0.5 1 23 243 265 243 265 0.98

8 15 7.8e-05 0.0087 17.9 0.1 1 23 271 293 271 293 0.97

9 15 0.012 1.3 11.0 5.2 1 23 299 322 299 322 0.94

10 15 9.1e-06 0.001 20.8 1.8 1 23 330 352 330 352 0.97

11 15 0.21 24 7.1 3.8 1 23 373 395 373 395 0.88

12 15 2.8e-06 0.00031 22.4 1.5 1 23 401 423 401 423 0.98

13 15 3.5e-06 0.00039 22.1 1.9 1 23 429 452 429 452 0.97

14 15 3.3e-05 0.0037 19.0 0.9 1 23 458 480 458 480 0.98

15 15 2.2e-05 0.0025 19.6 1.4 1 23 486 509 486 510 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.56	62	5.7	6.1	1	23	52	77	52	77	0.73
2	15	2.3e-06	0.00025	22.7	2.6	1	23	83	105	83	105	0.96
3	15	3.9e-06	0.00044	22.0	1.1	1	23	111	133	111	133	0.98
4	15	1.3e-06	0.00015	23.4	4.8	1	23	139	161	139	161	0.98
5	15	0.00017	0.019	16.8	0.9	1	23	187	209	187	209	0.98
6	15	0.00032	0.036	15.9	2.5	1	23	215	237	215	237	0.94
7	15	1.1e-06	0.00012	23.7	0.5	1	23	243	265	243	265	0.98
8	15	7.8e-05	0.0087	17.9	0.1	1	23	271	293	271	293	0.97
9	15	0.012	1.3	11.0	5.2	1	23	299	322	299	322	0.94
10	15	9.1e-06	0.001	20.8	1.8	1	23	330	352	330	352	0.97
11	15	0.21	24	7.1	3.8	1	23	373	395	373	395	0.88
12	15	2.8e-06	0.00031	22.4	1.5	1	23	401	423	401	423	0.98
13	15	3.5e-06	0.00039	22.1	1.9	1	23	429	452	429	452	0.97
14	15	3.3e-05	0.0037	19.0	0.9	1	23	458	480	458	480	0.98
15	15	2.2e-05	0.0025	19.6	1.4	1	23	486	509	486	510	0.96

Sequence Information

Coding Sequence: ATGTTTGTTGTTTCAGTGGCGATTTACGGTGGGCCGCCCGGGCCCTCAGCGCAACCCGTACCTGCCGCGTCCAACCGCGTCTCATCGACGCCAGAACCGACGCTCACCGACCTCGACGACTCCGACCCGGCTCCGACATCCAGACGTAAAAAACACACATGCGACATTTGTTATAAATCGTTTAAAAACCCAAACGCGAAAACTAAACTTATAATCCACCGCCGCACCCACACGGGCGAGAAACCCTACTCGTGCGATGTCTGCGACAAACGATTCGCACAAAAGAGTCACTTAAACACCCATTACGCGTACCACATGGGCAAGTTCAAGTTCTCCTGCGAACTATGCGACGGGCGGTTCACACAAAAAAGCCAATTTGTTATACACATGCGCACGCACACCGGCGCGAGACCATACTCCTGTGATATGTGCAACAAAACATTTAGACAAAAAGGCCACTTGACTGTCCATAAAAGAAAACATTTGAAATATGACCCTAGTCGTGTAGAGCCGGGAGAAATAACCTGCAAATCAGAATTTTCAGAGGAAACTAAAGATTTCACATGTGACATTTGTAAAAAACAATTTGCAGAAGAAAGTACTTTCAGCGCTCATTTAAAAAACCACACCGGCGATTACCCATTTACTTGCGAAACTTGCGATAGGAAATTCAATTCACAATTTGCCCTGACCAATCATAAATTTGAACACGCGGGAGGGAAACCTTTCAAGTGTGAAAAATGTGGCAAAGGGTATACATCAAAAGGTGCTTTAAGACTCCATTTGAAAGTTCACAATGAAGAATATAAGTTTGCTTGCGTCCTTTGTAATAAACGATTCATAATAAAAGACGCTCTTAGTGTACATATGCGTGTACACACAGGAGAAAAACCGTATTCTTGTGCCACATGCCAAACGAAGTTCCGCTACAGGTGCAGCTTGAAGAAACATTTATTAGATAAACATAACCAAGTTATGGACAAACAGTTCTGTTGCGATATCTGTGGAAAACGATTTGCACTACAAGGTACTTTAAGCAAACACATGGAAAAACATGCTGAGAAAAAAAAAGAAGATGAAGCCAGAAAGGAGGGGCGATTAGAAGATCTAAAACCGTTCATGTGTGAAATATGTAGCAGACGATTTTCAACAAAAAACATTTTGAAATGTCACAGAGATACGCACTCCGAAGAAAGACCTTTTGAATGCGAGATTTGTCGTAAGACATTCCGTATGAAGAAGTATTTAGAAGACCACATGAAGGTACATGAGAACTTCAAACGACATTCATGTGAAGTGTGTGGACAGCAGTTTAAACATAAGTCTGCCTTAGCGGTTCATATTCGAAGATTGCATTCGGAAAGCATGCCTCATAGATGTGATGTGTGCGATAAATCTTACCCAGTAGTTGCTGAACTGAAGAAACATTATCGTTCGCACACCGGAGAGAGACCATTCGCCTGCGAAATATGTTACAAAAGATTCCCTCGACAGGATGGGGTGCGGAGACACCTTAGACGAGTGCACCACGATAAACCAACGAAATTTATTAAATTAAAAGAGTTTAATAATCCTTACTAA
Protein Sequence: MFVVSVAIYGGPPGPSAQPVPAASNRVSSTPEPTLTDLDDSDPAPTSRRKKHTCDICYKSFKNPNAKTKLIIHRRTHTGEKPYSCDVCDKRFAQKSHLNTHYAYHMGKFKFSCELCDGRFTQKSQFVIHMRTHTGARPYSCDMCNKTFRQKGHLTVHKRKHLKYDPSRVEPGEITCKSEFSEETKDFTCDICKKQFAEESTFSAHLKNHTGDYPFTCETCDRKFNSQFALTNHKFEHAGGKPFKCEKCGKGYTSKGALRLHLKVHNEEYKFACVLCNKRFIIKDALSVHMRVHTGEKPYSCATCQTKFRYRCSLKKHLLDKHNQVMDKQFCCDICGKRFALQGTLSKHMEKHAEKKKEDEARKEGRLEDLKPFMCEICSRRFSTKNILKCHRDTHSEERPFECEICRKTFRMKKYLEDHMKVHENFKRHSCEVCGQQFKHKSALAVHIRRLHSESMPHRCDVCDKSYPVVAELKKHYRSHTGERPFACEICYKRFPRQDGVRRHLRRVHHDKPTKFIKLKEFNNPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00871558;
90% Identity: -
80% Identity: -