Paur017947.2
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_947086415.1
- Location
- OX352299.1:33422336-33439963[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.6e-22 3.9e-18 67.2 11.3 1 92 112 196 112 200 0.85 2 9 1.7e-47 4.3e-43 149.2 4.3 90 266 286 476 276 500 0.87 3 9 2 5e+04 -6.7 7.8 197 251 483 537 468 556 0.58 4 9 0.43 1.1e+04 -3.2 3.4 4 39 513 548 503 586 0.41 5 9 0.43 1.1e+04 -3.2 2.2 4 44 629 669 626 705 0.56 6 9 0.43 1.1e+04 -3.2 2.2 4 44 745 785 742 821 0.56 7 9 0.43 1.1e+04 -3.2 2.2 4 44 861 901 858 937 0.56 8 9 0.43 1.1e+04 -3.2 2.2 4 44 977 1017 974 1053 0.56 9 9 0.48 1.2e+04 -3.3 7.5 125 166 1103 1144 1090 1153 0.46
Sequence Information
- Coding Sequence
- ATGGGTTCTCAGTCCAAAAGCGCAACTCCTGACAATAGTGACGACGAGAGCGGCGAAGCCTTCACTGATGGAGACTTCGGTGACTCTGATGACGAAATAAATGTAGAGTTAGACGTAGTAGAACCTAGCGAGGATTCTAAAGTTAACGAAACTGTAAATTCTGAGCTGGTAGACATGGAGATCGCTCACGGCGCCCGCAACGGCTTCGACGATGCTAAAGTTAACGGCCTTAAGAACGGAGGCGCGGAATGTGACGGGATGCCGGTGCGGCGGGACTCTCATGGCGACCAGAATCCGTCCATCGTTGGTATTCTTGGCGGGCAGCAGGATCATGCGGAGCAACGGCTAGCGGCGCGTCGGGCGGCGCGGGCGGAGGCGCGCGACATTCGCATGCGCGAGTTGGAGCGGCAACAGCGGGAGCAAGAGGACCATGCTGACAAGGCCTACGACATGTATGCCGAGACGGTGGGGCGGCGCACGGGCACCCGGCTGACGGGGCTCAGCCCGGCGGCGCTGCACTCGCCGCGGCGGAGCTCCGAGGACTCGGCTGATGACACCTTCAACGTCAAGGACCTTAGGAACACTTCACGGAGCGACACGCCGCTTTACCTGGTGAACCACTCAAAATGCGGGCACAAGTCCTTCGGAGGCGACTGGCGGCCGTATCCTAGAACGACACTTCGGTTTCACCTGGTGAGCCACGCGAAATGCGGGCTCGAGTCCTTTAGAGGCGACTGGCGGCCGTATTCTAGGGCGATACGCCGGTTTCACCTGGTGAGCCACTCGAAATGCGGGCTCGAGTCCTTTAGAGGCGACTGGCGGCCGTATTCCAGGGCGATACGCCGGTTTCTCCTGGGAGAATTAAAAGAAGTAGAAGAGAAATTCCGCAAAGCTATGATATTAAACGCACAACTAGACAACGACAAAGCTGCGCTCGGTTACCAGCTTGAATTACTAAAAGATCGCATTGAAGAGCTACATGAGGAGTACGCACAATTACAGCGCGAGCACAAAGAGAAATGCTCCGCTCACGAGCGTCTAAAACGCGAGCACTTGTCCCTCGAGCGCGAGCTCGGCGCCGCGCGGGACGCCGTGCGCGCGCGCGACCTGGCCGCCCGCGACGCCGGCTTCGCGTTCGTGGACGCCGCGCCCGCCGCGCCCCCTGCCGCGCCCCCCTCGCCCGCCACCCCCGCCACCCCCGCCACCAACGGGGACACGTCCACGCTGCCGCCGCTGGCGCTCGTGTCGCACCAGAACGAGAAACTGCTCAACGATGCCGGCGAGGGAACACTGGACGTTCGGTTGCAGAAGCTGTTGTCGTCGAAGCAGTCGCTGGAGGGCGAGGTGCGGCGCCTCAAGCTTCAGCTCAACGAGGAGCGCCACAACGGCGTCGCTCGTGCGCATGACCAGGATCTCGAGTCAGAGTTGGAGGCCCTCCGCAAGTCGAACGCGGAAGCGAAGGCGCGAGCGGCGCGCGCGGAGGCCGAGGCGGCGCTGCAGGCGGCCGGGGGCGCGCGCCTCGCCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGTCAGTATTACACTGCAGGCGGCGGGGGGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGGGAGGCCCGAGAAGCACTAAACCGAGTGGAGGAGCTGGAGACGGAGAACAGCCACCTCACCAAGCGCCTCGACAAGCTCAAGAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGSQSKSATPDNSDDESGEAFTDGDFGDSDDEINVELDVVEPSEDSKVNETVNSELVDMEIAHGARNGFDDAKVNGLKNGGAECDGMPVRRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEARDIRMRELERQQREQEDHADKAYDMYAETVGRRTGTRLTGLSPAALHSPRRSSEDSADDTFNVKDLRNTSRSDTPLYLVNHSKCGHKSFGGDWRPYPRTTLRFHLVSHAKCGLESFRGDWRPYSRAIRRFHLVSHSKCGLESFRGDWRPYSRAIRRFLLGELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHLSLERELGAARDAVRARDLAARDAGFAFVDAAPAAPPAAPPSPATPATPATNGDTSTLPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLNEERHNGVARAHDQDLESELEALRKSNAEAKARAARAEAEAALQAAGGARLAAQLQRLKAQADARDDAEEQLKQERRKLQREVSITLQAAGGSCSGSRRRPTPGTTPRSSSSRSAGSCSGRSVLHCRRRGAAAAAQGAGRRQGRRRGAAQAGAQEAAAGGQYYTAGGGGQLQRLKAQADARDDAEEQLKQERRKLQREVSITLQAAGGSCSGSRRRPTPGTTPRSSSSRSAGSCSGRSVLHCRRRGAAAAAQGAGRRQGRRRGAAQAGAQEAAAGGQYYTAGGGGQLQRLKAQADARDDAEEQLKQERRKLQREVSITLQAAGGSCSGSRRRPTPGTTPRSSSSRSAGSCSGRSVLHCRRRGAAAAAQGAGRRQGRRRGAAQAGAQEAAAGGQYYTAGGGGQLQRLKAQADARDDAEEQLKQERRKLQREVSITLQAAGGSCSGSRRRPTPGTTPRSSSSRSAGSCSGRSVLHCRRRGAAAAAQGAGRRQGRRRGAAQAGAQEAAAGGQYYTAGGGGQLQRLKAQADARDDAEEQLKQERRKLQREVSITLQAAGGSCSGSRRRPTPGTTPRSSSSRSAGSCSGRSVLHCRRRGAAAAAQGAGRRQGRRRGAAQAGAQEAAAGGQYYTAGGGGQLQRLKAQADARDDAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -