Paur008605.1
Basic Information
- Insect
- Pammene aurita
- Gene Symbol
- -
- Assembly
- GCA_947086415.1
- Location
- OX352303.1:9215938-9235318[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.7e-11 6.1e-08 33.7 0.0 4 39 171 207 168 211 0.89 2 4 1.2e-12 1.6e-09 38.8 0.1 1 39 222 260 222 263 0.94 3 4 1.8e-14 2.3e-11 44.6 0.0 2 45 278 322 277 322 0.96 4 4 2.9e-18 3.8e-15 56.8 0.0 1 43 329 372 329 374 0.95
Sequence Information
- Coding Sequence
- ATGCCTGGCCGCGGTTTTCCGCAGGTCAAGCACGAACCGGCTTCCGAAGACGACGACTCGCAATACGCACACGGCTATCTCACAAATCAGATACCGTCTCTGGAACTCCGACCGGTGAAGCTCGAGGCCGATATAGACGACAATGCGTCTGCGCATATATTACGGCACTTACAGGGTTCGGAGAGCCTGGAGGAGCTAGCGCTGCCGGCGCCGGCGGGCCCCGCCGCCACGCCGGTCTCCGTCAAGCAGGAGCCCGCCGAGCCTGCCGTCACGCTCGAGACTCTTGCGCCGGCGCTGCATTCGGACACGCTGGGTGCCATGCTCATCGATAGACACAAGACGCTACCCGGCGCGAACGACGCCGACTCCTTGGATTTCATGCCTCTCCTTACTGTTAAAGACGAGCCTCTCTCTGAAGGAGAACAACACCACTTGAGTGGGTCAGACACGAGCGACTCCAGCACTCAGCCCGAGCCGCCCCGCGGGAGCCCTAAGAACTGGACGCAGCAGGATATGGAGCTGGCACTGGAGGCGCTGCGGACGCACAATATGAGTCTCACTAAGGCATCAGCCACATATGGCATCCCGTCAACAACGCTCTGGCAGCGTGCGCATCGGCTTGGTATCGACACCCCAAAGAAGGAAGGCGCGTCCAAGTCCTGGAGCGAAGATGACCTGCGTGGCGCTCTTCACGCGCTGCGGTCCGGGGCTATCTCTGCCAACAAGGCCAGCAAGGCTTACGGCATTCCAAGTAGCACTCTCTACAAGATCGCGCGGCGCGAGGGCATTCGCCTGGCGGCTCCGTTCAACGCAGCACCTACCGCGTGGCGAAGAGCTGACTTGGAGAGGGCACTGGCTTCCATCCGCTGTGGAGCGGCGTCTGTACAGAGAGCGGCTTCGCAGTTTGGCATACCTACAGGTACGTTGTATGGGCGGTGCAAACGAGAAGGGATTGAGCTATCACGGTCTAATCCTACGCCCTGGTCTGAAGATGCCATGGGAGAGGCTTTAGAAGCCGTTAGGGTGGGACAAATGTCAATAAACCAAGCAGCGATCCACTACAATTTGCCTTATTCATCGCTCTACGGGCGGTTTAAGAGGTGTAAATATCAAAGTCCTCAAGAAATGCCCCAGCAGACCATGCCCGAGATTGAGATGGAGTCTCAACAGAATCAGATGTACTATCCTCACCAAGTGCCCATGCCCGAGGAGTACCATCAGAGCTACTTGGCGGAACCTGACGCCATGCATGCCCCCGTCATTCAGGAGCCTTATGGGATGTACTATCAAGGACGTCAAATCACGCGCACGGAAAATCGTGCCCTCATCGCCAGCCCGTGA
- Protein Sequence
- MPGRGFPQVKHEPASEDDDSQYAHGYLTNQIPSLELRPVKLEADIDDNASAHILRHLQGSESLEELALPAPAGPAATPVSVKQEPAEPAVTLETLAPALHSDTLGAMLIDRHKTLPGANDADSLDFMPLLTVKDEPLSEGEQHHLSGSDTSDSSTQPEPPRGSPKNWTQQDMELALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEDDLRGALHALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGAASVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQEMPQQTMPEIEMESQQNQMYYPHQVPMPEEYHQSYLAEPDAMHAPVIQEPYGMYYQGRQITRTENRALIASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- iTF_00659381;
- 80% Identity
- -