Pscu004152.1
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- -
- Assembly
- GCA_958295655.1
- Location
- OY282449.1:115067274-115068833[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.6e-06 0.023 14.8 0.0 22 52 325 355 322 357 0.85 2 5 0.022 1.9e+02 2.2 0.0 21 44 352 375 350 380 0.86 3 5 0.00093 8 6.6 0.1 21 43 380 402 377 406 0.90 4 5 0.0047 41 4.4 0.6 21 43 408 430 402 439 0.87 5 5 0.41 3.6e+03 -1.8 0.0 22 44 437 461 433 463 0.63
Sequence Information
- Coding Sequence
- ATGGCTGGCAGTGAAGCGAAAGACATCGTCATCTGCCGTGCGTGCGTAACTGAGTGCGAGAACTACAAATCGTTGTTCAAACACGGCATCATCTTGGGAGAAGTTCAGACACTTGGCGCAATGTTAGCTTTTTGCACGAATTTAGAGATTTCGCAGGGAGAACAGCATTTACCTCATTATATTTGTAACCAATGCGTACACTCTGTGGCGAAATCGTATGCATTTAAGAAAATGGTTCTGGAAGCAGATGAAATCCTACGAAAACAACAAGCGGAATTGGTTGGTGAGCTTGTAGAGGAGAGTGCCGATGATGAGACAGAAGAAGTGGTAGTACAACAGCATTATGAAATCGAATCGGAAGAGTTACAGGAATTGGCGACAGCAGCTCAAATAAGACGTACCATGGATACTATGGAATACATGACATTAACAGTGTTGCAGGAATCTGCGGACGAAGAGGAACAAATTTTCGAAGAACACAATCAGGAAGTACatgaagaagacgaagaagaagaagaaaaatttgatgAGGAGACCGTGGTAGTCCATCAAGAATCAGAGGCAACAGAAGTGTACAGTACTGAAAACGAGGTTGAAGAAGATTTTCAGGAGGAACAGTCGCAGGAGGAAGCTGAATTTTACGAAGTGACCTCAATACCTGAAGAAGAACAAGGCCACTCGGAAGTCGATGTAACAGAGCATATAGGAAGTGATTCAAGAAAACGAACATATTCGGAAGAGATTGATGCCAAAATAATGATGCCCGTAAAAACACGTCGAAAAAACACAGATCCGAAACCTTTAAATCCGGAATTGCAATGCAAGGTTTGCGGTAAACAACTGAGCAATCCCAACTCCTTCAAGTACCACATGCAGCTGCACTCTGACAAGACTCCATTTTTGTGTAGTCTCTGCGGTGAGGGCTTCAAGACGCGAAACGCATACGAAGGACATTTGGTCATACACAATCCCAATAATCCCAATACCTGCGATATATGTGGTAAATCGTATCGCCAATCTTCGTCACTTCGCACCCACATGCTTATCCATACCGGTGAGAAACCCTTTGTCTGTGACATATGTGGCAAGTCGATGACACAAAAGTCTGGCTACAAGAAACACATGCTCGTGCACACTGGCGAAAAGCCACATACATGCGATGTTTGTGGGCGTGATTTTCGTTACTCGAGCAATTTAATTGCCCACAAACGTTGCCATTCCGGCGAGAAACCGTATGTGTGTCCGCACTGCGAAAAGTGTTTCCCCACATCGGAGCAAATGAAACGTCACGCCGTCACACACACCGGTGACCGTCCGTTTTCCTGCGATATGTGTGACAAGACGTTTAAACGACGTTCATCAATGTTAGCACATCGACATTTGCATGAAACGTCGCCACACGAGCTAAAGCAGGTGACATTGGTCGACCAGAAAGTTTGCAAATCGAATGTGgtgcaattatattga
- Protein Sequence
- MAGSEAKDIVICRACVTECENYKSLFKHGIILGEVQTLGAMLAFCTNLEISQGEQHLPHYICNQCVHSVAKSYAFKKMVLEADEILRKQQAELVGELVEESADDETEEVVVQQHYEIESEELQELATAAQIRRTMDTMEYMTLTVLQESADEEEQIFEEHNQEVHEEDEEEEEKFDEETVVVHQESEATEVYSTENEVEEDFQEEQSQEEAEFYEVTSIPEEEQGHSEVDVTEHIGSDSRKRTYSEEIDAKIMMPVKTRRKNTDPKPLNPELQCKVCGKQLSNPNSFKYHMQLHSDKTPFLCSLCGEGFKTRNAYEGHLVIHNPNNPNTCDICGKSYRQSSSLRTHMLIHTGEKPFVCDICGKSMTQKSGYKKHMLVHTGEKPHTCDVCGRDFRYSSNLIAHKRCHSGEKPYVCPHCEKCFPTSEQMKRHAVTHTGDRPFSCDMCDKTFKRRSSMLAHRHLHETSPHELKQVTLVDQKVCKSNVVQLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01470758;
- 90% Identity
- iTF_01133138;
- 80% Identity
- iTF_01133138;