Pscu002683.1
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- Trl
- Assembly
- GCA_958295655.1
- Location
- OY282449.1:74456896-74477124[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.5e-36 3e-32 110.4 3.2 3 54 317 369 314 369 0.93
Sequence Information
- Coding Sequence
- ATGATGGCATTGCCAATGAACTCGTTATATTCCCTGACATGGGGCGACTATGGCACGTCGCTAGTGTCGGCCATTCAACTTTTACGCTGCCATGGCGATTTAGTCGACTGCACTTTGGCGGCTGGCGGGCGTAGCTTCCCGGCGCATAAAATCGTCTTGTGTGCTGCATCGCCGTTTCTACTGGATTTGCTCAAGAATACACCATGCAAACATCCAGTGGTAATGTTAGCGGGCGTAAATGCCAACGATTTGGAGGCTCTACTTGAATTTGTATATCGCGGTGAGGTAAGCGTGGACCATGCACAATTGCCATCACTATTGCAAGCGGCGCAGTGTTTGAATATACAAGGATTAGCGCCACAAACAGTGACCAAAGATGATTATACCACACACTCGATACAACTACAACATATGATACCGCAACACCATCATGAACAAGACCCACTGATTGCCACAATTGCCACTGCACCACAACAAACCGTACACGCACAGGTTGTTGAAGATATCCATCAAGCTGGCCAAATCTTGCAGACCACCACTACACAAACAAATGCCCCCGGACAACAGCAAACGATTGTGACAACAGATTCGCCCAAGGATGTTATACAGCAATTTTTACCCGCTCGCAAACGGAAGCCACGTGTTAAGAAAATGTCgcCAACTGCACCGAAAATCCCGAAAGTTGAAGGCATGGAAACGATTATTACCAATCAGCCAAATCAGGCCGGTGTGCAGgcgcaacatcagcaacaacaaatgcagcagcaacaacaacagcaaggcAATATTGAAAATGGCAATGAAGCTCAAATAATCACCTCGACACCACACATCAAGAGTGAAGTAACAAAAGTGGAATCAATCGTAACCATGGACCCCAATTTGACACCAATTGCATCAGGGGGTAATGTAACCGGCACCGATCAACCGACACCAGCTCCCAAGGGCACTAAACGTCAGAAGACGCCAGGAAGTGGAGCGGATaAACCACGGTCACGTTCACAATCTGAACAGCCAGCAACATGCCCCATTTGTTATGCCGTCATCCGCCAATCGAGAAATTTGCGTCGTCACTTGGAATTGAGACATTTTGCCAAACCCGGCGtaaagaaggaaaagaaaagtaagtCAACGACCAACGAATCTGCTAAtaataatactactactactactactactactactactgatGGTGAAATATCACAATTGCCAGTCTATACTAGTACAGCagaagcagtagcagcagcaagagcaaTCGCCGGTTCCGCCATTGCTGCTACATCTTCGAGTGTTCTTACTATGAATAATGTTAATGTTCTTATGAAACGAGAACCTAATGTaaatggtgatggtgatggtgatggtgatgcaGGAATGGCAAAAGGAACCGAAGCATCTGGCAAGAAATCGGCTGCCGGAACTGGTAATGCTGCTGGTACTTCTGGTAATTCTGGCGGCGCATCCACGATTACAGCTGTTAGCACAATACCGCAAGTTCAATCGGTACAATCGTTGCATACATTACAAACGGTGCAAGTGAAAAAAGATCCCGATGCACAGAATCAAGGACAACAAACCATGACAGTGACAACAGCAGGTGGGCAACAGCAACAGGTGCAGCAAGTTCAggttcaacaacaacagcagcagcaacaacagatacagcagcaacaacatcatcaaatTATTGATCAATCGGGCAATATAACAACGACAAGTGCTGCTTCAGCAGCACAGCAACAAGGTGGACAACAAATTGTTACACAAACGGAAAATACCGATGGCACAACATCGTTATCAATAGCACAAGTGCAAACGTTGCAGGGCCATCAAATAATTGGAAATCTTAATCAGGTGAATATGTCTGAATTTCAATCACATCCAACGTTGTGA
- Protein Sequence
- MMALPMNSLYSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQGLAPQTVTKDDYTTHSIQLQHMIPQHHHEQDPLIATIATAPQQTVHAQVVEDIHQAGQILQTTTTQTNAPGQQQTIVTTDSPKDVIQQFLPARKRKPRVKKMSPTAPKIPKVEGMETIITNQPNQAGVQAQHQQQQMQQQQQQQGNIENGNEAQIITSTPHIKSEVTKVESIVTMDPNLTPIASGGNVTGTDQPTPAPKGTKRQKTPGSGADKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGVKKEKKSKSTTNESANNNTTTTTTTTTTDGEISQLPVYTSTAEAVAAARAIAGSAIAATSSSVLTMNNVNVLMKREPNVNGDGDGDGDAGMAKGTEASGKKSAAGTGNAAGTSGNSGGASTITAVSTIPQVQSVQSLHTLQTVQVKKDPDAQNQGQQTMTVTTAGGQQQQVQQVQVQQQQQQQQQIQQQQHHQIIDQSGNITTTSAASAAQQQGGQQIVTQTENTDGTTSLSIAQVQTLQGHQIIGNLNQVNMSEFQSHPTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01470622;
- 90% Identity
- iTF_01133014;
- 80% Identity
- iTF_01133014;