Pscu003075.1
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- ZNF518A
- Assembly
- GCA_958295655.1
- Location
- OY282449.1:85513171-85516489[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.012 0.61 10.6 1.1 1 23 120 143 120 143 0.96 2 15 0.0012 0.061 13.8 1.1 3 23 150 171 149 171 0.94 3 15 0.00034 0.017 15.5 4.2 3 23 182 203 181 203 0.97 4 15 0.0024 0.12 12.8 1.2 2 23 274 296 273 296 0.96 5 15 0.00021 0.01 16.2 4.2 2 23 307 329 306 329 0.96 6 15 0.00039 0.019 15.3 6.3 2 23 499 520 499 520 0.98 7 15 0.00024 0.012 16.0 4.5 1 23 526 549 526 549 0.95 8 15 0.00027 0.014 15.8 1.5 1 23 554 576 554 576 0.97 9 15 1.2e-06 5.9e-05 23.2 3.6 1 23 586 608 586 608 0.96 10 15 0.00035 0.018 15.5 1.3 1 23 613 635 613 635 0.97 11 15 1.8e-07 8.8e-06 25.8 0.5 1 23 641 663 641 663 0.96 12 15 3.6e-05 0.0018 18.6 0.6 1 23 669 691 669 691 0.98 13 15 1.5e-06 7.7e-05 22.9 1.7 3 23 699 719 698 719 0.99 14 15 7e-07 3.5e-05 24.0 1.7 1 23 725 748 725 748 0.98 15 15 4 2e+02 2.7 0.2 1 8 753 760 753 777 0.78
Sequence Information
- Coding Sequence
- atggaaaacaatagaaaatttgaTACAGAATCTATTTGCCGAGTTTGTTTACTTCGTAAGTCTGaactatttttgatattcgACGAAATACACGCAGAAGAAAGTGGGGTAACGATTTCGGAAATACTAACAGAGTGTACAAGATATAAAGTTGGGCGATATGATAATTTGCCACATCAAATTTGTGGAGAATGTATGAAAACAGCACGGGAAGCATTTCGTTTTAAAAGGCAGGCTGAGGTTGCATATCGCACCTTGGTGGGGTTGATGGATGATACGGAGACAGCGAATCTAAATCAATACCATAAGTCGGTAGAATGTTGCGATAAAGGAACGCAAGTTGGAAAAAATTCGGTTCATCCGTGCGAGATGTGTGaccttaaattttttgatgttttcgATTTGCGCGAACATCGATACACAGTGCATCGAGGCAAtgacaaaaattgcaaaatatgtgGCGAAAAATTTCAGCGTATGCGCCAATTGCGAAGCCACTTGATACAGCAACATCCAGATGAGGGCTTAATACCGGGTATACTGTGCAGTTTTTGTATGCGATCGTTTTCACGAAAGGAGCATTTAAAGCGGCATTTGCGCTCAGTGCACAAACAAAATTTGGAAAGCACGAATGTTGCTTTGGAATCAAAAACTCTTTTGAAAATTGATGAGATAAAAAAGGATTCTAAGGATGACTTACCTGGTTGGACAAATCGAGCAGACGACGAAGATGATTCGGACATTAATGATCCCAATGTGTCTGTAACTGATTGGCCTGAAAGCAGCAATACCACACTATCGCATCGTGTCTATAATAAGCAGTGCAAAGTATGTGatgagaaatttgaaaatatgcgTAAGATGCGAAGTCACATGATTAAGGCCCACGCAAATGAAGGCATTGTCGTATCAGATATACAATGCACATTTTGTATGCGATCATTTGCCCGAAAGGAGCATTTGAGGCGGCATTTGCGTTCCaagcataataaaaatatggaaagCAACAAAGTGTCATTGGAAGAACcggaaattgatttgaaaagaaAGGTCGTTCTACCAGATGGGGAGGATTGTGCTGGAGATGAAAATGATTCGGATATGGATGATGCCGATATGTTTGCTACTAATCCCATTTCTAGCGATGACGAAGAGGAAGCTGATAATTTTAAAGCTTTCGAAATGCGTTTGCCTATGCTCAAATTAGAACCGGAATTAAACATAAAAGttGAAGAAAGTAACGATGCTAATACCGACTTCATTTCACACGATTCCATGGAGTTCAAATCTGACGAGGAccctaaaaatatattaaaagaagaaaacgatgatgattttattgatgatacgGGAGTTTCCTCTCCTGAGCAAtccaaaaaagtgaaaaaatcaaatattaaaggCAAACTCAAAGTGGAAATCATACGTGAAAAGGCAGACAATGATAAACAAGTTAAAAAGCGAAGAAGCAACAAAGCATCGAATCCAGAAAATCGTTGTGAACTATGTCAACGAACATTTTCTCGTGGTTGCCACTTGACACGTCATATGCTCACTCATCTCGACGAGAAGTTACACGAGTGCTCATTTTGTTCGAAACGTTTTGCACGCAGCGATCACATGAAGAAGCACATATTGAATGTTCACAATGATAAGGATTTCAAATGTGATCAATGTACTTGTGCATTTGCACGTGCTGAAGATTTGGAACGTCACAAGGTACGTCATGGCACTGATCCAGATGCATTTAAAGTTCATGATTGTGAATATTGTGGAAAGAAATTCACAAGCAAAACTTATTTGCGCAAGCACATACTAATGCATACGGACCGGATTTTCGCGTGCAAGTCTTGCGATGAAACGTTTAAGGAACGTAAACTTCTGCGAGAGCACGAAAAGACGCATAGCGCAGGACGAAATTTTCTGTGCTCCATTTGTGGCGAGAGTTTTGTACGAAACGACTATTTGCGAGTTCATATGCGACGGCACAACGGTGAAAAGCCATTTAAATGTCAATATTGCGATAAAGGATTTCCAAGAGCTACCGATGTTAAAATCCATGAGAGataTCATACCGGTACTAAACCCAATCTCTGTACACTTTGTGGAAAAGGCTTTCATCGCGCCTACAATCTTACAATCCATATGAGAACTCACACCGGTGAACGGCCTTTCAAATGTGATCACTGTGAGAAAGCTTTTGCCCAAAGTAATGATCTAAAATCGCACATACGCCGCATTCATACAGGAGAACGTTACAAATGTAATGTTTGTGATACTGCTGGCTTCTTGCATTTATATGGCTTGCGACAACATTCTTTACTTgcacataatatacatattgaATCACCCACGGGACGTTTGCAAAAGTTTTTGCCTAATCCAGTTCTAACTGAGCAAATAGCAGTGTCAGTTCCAGAGCACATCACACCATTATTTGATCTGAAAAATTGTCTGCCTAGAGTAGCAAACGAACAGAGCATTATACAAGAAGCTAAAATAATTCAACCTGAGATAATTCCGCCTCAGCAATTCAGGCAATTGTCAACTCAGCCAATTGCTACGAATTCACCGTATGAAACTACGTAA
- Protein Sequence
- MENNRKFDTESICRVCLLRKSELFLIFDEIHAEESGVTISEILTECTRYKVGRYDNLPHQICGECMKTAREAFRFKRQAEVAYRTLVGLMDDTETANLNQYHKSVECCDKGTQVGKNSVHPCEMCDLKFFDVFDLREHRYTVHRGNDKNCKICGEKFQRMRQLRSHLIQQHPDEGLIPGILCSFCMRSFSRKEHLKRHLRSVHKQNLESTNVALESKTLLKIDEIKKDSKDDLPGWTNRADDEDDSDINDPNVSVTDWPESSNTTLSHRVYNKQCKVCDEKFENMRKMRSHMIKAHANEGIVVSDIQCTFCMRSFARKEHLRRHLRSKHNKNMESNKVSLEEPEIDLKRKVVLPDGEDCAGDENDSDMDDADMFATNPISSDDEEEADNFKAFEMRLPMLKLEPELNIKVEESNDANTDFISHDSMEFKSDEDPKNILKEENDDDFIDDTGVSSPEQSKKVKKSNIKGKLKVEIIREKADNDKQVKKRRSNKASNPENRCELCQRTFSRGCHLTRHMLTHLDEKLHECSFCSKRFARSDHMKKHILNVHNDKDFKCDQCTCAFARAEDLERHKVRHGTDPDAFKVHDCEYCGKKFTSKTYLRKHILMHTDRIFACKSCDETFKERKLLREHEKTHSAGRNFLCSICGESFVRNDYLRVHMRRHNGEKPFKCQYCDKGFPRATDVKIHERYHTGTKPNLCTLCGKGFHRAYNLTIHMRTHTGERPFKCDHCEKAFAQSNDLKSHIRRIHTGERYKCNVCDTAGFLHLYGLRQHSLLAHNIHIESPTGRLQKFLPNPVLTEQIAVSVPEHITPLFDLKNCLPRVANEQSIIQEAKIIQPEIIPPQQFRQLSTQPIATNSPYETT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01470685;
- 90% Identity
- -
- 80% Identity
- -