Pscu012670.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Palloptera scutellata
Gene Symbol
-
Assembly
GCA_958295655.1
Location
OY282452.1:6517226-6524636[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 4.2e-05 0.0021 18.4 2.1 1 23 539 561 539 561 0.97
2 18 1.8e-05 0.0009 19.5 0.4 1 23 567 589 567 589 0.97
3 18 0.0015 0.076 13.5 0.5 1 23 595 617 595 617 0.95
4 18 2.9e-05 0.0015 18.9 3.1 1 23 623 645 623 645 0.97
5 18 6.7e-05 0.0034 17.7 4.7 1 23 651 673 651 673 0.99
6 18 0.00012 0.0061 16.9 5.7 1 23 679 701 679 701 0.97
7 18 9.6e-07 4.8e-05 23.5 3.7 1 23 707 729 707 729 0.98
8 18 2.1e-07 1.1e-05 25.6 2.4 1 23 735 757 735 757 0.97
9 18 0.00013 0.0063 16.9 6.7 1 23 763 785 763 785 0.97
10 18 3.6e-05 0.0018 18.6 6.5 1 23 791 813 791 813 0.98
11 18 6.1e-06 0.0003 21.0 4.5 1 23 819 841 819 841 0.98
12 18 1.4e-05 0.00071 19.9 8.1 1 23 847 869 847 869 0.98
13 18 3e-06 0.00015 22.0 7.2 1 23 875 897 875 897 0.98
14 18 1.3e-06 6.4e-05 23.1 7.7 1 23 903 925 903 925 0.98
15 18 0.0004 0.02 15.3 9.5 1 23 931 954 931 954 0.95
16 18 0.00034 0.017 15.5 0.5 1 23 960 982 960 982 0.97
17 18 0.0015 0.076 13.5 4.4 1 23 992 1014 992 1014 0.98
18 18 1.8e-05 0.00089 19.5 1.6 1 23 1020 1043 1020 1043 0.96

Sequence Information

Coding Sequence
ATGTTGCAGTCACATATATCACAACAGCAAAGGCAATCACAACAACATCAATTCATGTCGTCTTCTACAGgaaatattaatagtaataatgcTGCCACAACTGTCgaatcagcagcagcaccagcaacaacatcgaTTGTTGTAAACGATGATGGCGGCAGCAATGCTGGTAATATTTTATCGCAACATACAATTACTTCTTCAATTAATTCTGCTATCAGcagtggtgttggtgttgtgaATCAACAACAATCTACAAATATTTCAtctattatcaataaaactttaGCAACATCATATGCTGCAACACAATTAGCTCTACAGGAGCAACAAGCGCACATTGCAGCAACGTCGACAATCACTACGGCAACATctacagaaacagcaacaatagtacCACTACCATCATcggcaccagcaacaacagcgacaacaacaacaacacttttaCCAAATGCACAAAATttgaaTAAATATTGGGTCCTAACAAATTTCCAAGATCCAGAACAACAAGCAGCTGTACCATCCTATAATATTGGGATATCACAGTCACCAGCAACGACAGTCATACCGACTTTGGCACAGCCTATAGCCAAAGGGTCAACAGTtccactaacaacaacaactgaagcaAACGCATTAGCACCATTGATTGTTGCAAAGGAAACAGCTGCAGCAGGTGGCAGTGCAGGTGCGCTGCAGCTACCTCAATCAATGCTAACAAATGCAGGCATTGGGCAGCAGTTGCCGAATGGAACAATAATTAcagcacaacagcagcagcagcagcagcagcaacaacaattacatgtGCATGGTGCAATTGATGATAATCGACAACAGCAGCATGTATCACAGCAACAACACGTGGTAGCTGctatacagcaacaacaacaacaacagcagcagcagcagcaactactaCCACAACCAGATTCCATTAAAGTGGAAAAACCGTTTTCAGCCAACGGGTCGAAACTTAATCAAAAACTGATAATGCAACATGTCACAGCCTCGTCCACGCCGACAACATCAGGCGGTGGCGTTGGTAGCGGCGTCGGTGGCGCTACGACCATAACATTAGGCGCTCCTAAAACTGAAATCAAAGATGATGGCAGCATGGGCAAACCGCCACCGGGCATTGAAATGTACAAAGTGAACATTGAGGATATATCACAGCTATTCACGTATCACGAAGTGTTTGGCAAAATACATGGCGACGTCATGAATCATCAGCTGGCAGCACATGGCGTGAATGCACCGACAACGTTGCCGCCACACACCAATGTTTCCAATAATGCCGCTGTTGCAGCGGTTGTGGCCAGTGCCAATgctgcagcagctgcagcagccgcagcaacagCCGCCAATACAACCGTTGCAGGAGTCGTTCCTCCTACCACAACAACTAATCTAACGACAGCTATTAGCAGCACAACAACTGGTGGTGGCGGCCTAACAACAACGGCACCAGCAGCCACATCTGTCACGGTTACAGCGACCGGCGTCACAGGGCAATTATTGATGCCCAAAATGGAAGGTGGCATACCGGTGGTCGATCAAACGGCTACGATAACATTAGCGCCCGACGGCACACCCATCGCCACCGGGACACATGTATGCGACATTTGTggcaaaatgtttcaatttcgCTATCAACTGATTGTGCATCGACGCTATCACAGCGAAAGGAAACCGTTCAATTGCCAGGTATGTGGGCAGGGCTTTACCACATCGCAAGATCTGACACGTCACGGCAAAATACACATTGGCGGCCCGATGTTTACGTGCATCGTATGCTTTAATGTATTCGCTAACAATGCCAGCTTGGAGCGTCACATGAAACGCCATTCGACGGATAAACCGTTCGCGTGCACCATCTGCCAGAAGACATTCGCTCGCAAGGAACACTTGGACAACCACTTCCGTTCGCATACCGGCGAAACACCGTTCCGATGCCAGTACTGCGCCAAGACGTTCACGCGCAAGGAGCACATGGTCAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTCAACCACTACATGTGGCACACTGGTCAAACGCCACATCAGTGTGAAGTGTGCGGCAAGAAGTATACACGTAAGGAGCATTTAGCCAATCATATACGCTCCCACACCAACGATACACCATTTCGATGTGAGATTTGCGGCAAGAGTTTCAGCCGCAAGGAACATTTTACCAATCACATTCTCTGGCatacagGTGAGACTCCTCATCGTTGCGATTTCTGTTCGAAAACATTTACACGCAAGGAGCATTTGTTGAATCATGTTCGCCAGCACACTGGTGAGTCACCGCATCGTTGCACTTATTGCTTGAAAACGTTTACGCGCAAGGAACACCTCGTCAACCATATACGCCAGCATACGGGCGAGACTCCGTTCAAGTGCACCTACTGTACGAAAGCGTTTACGCGTAAAGATCATATGGTCAATCATATACGTCAGCACACTGGAGAGTCGCCACACAAATGCACATACTGCACGAAAACCTTTACACGCAAGGAGCATCTAACGAATCATGTACGCCAGCATACCGGGGAATCACCGCATCGTTGCAGCTATTGCCAGAAGACTTTCACGCGCAAAGAGCATCTCACGAATCATATACGTTTGCATACCGGCGATTCGCCGCACAAGTGCGAATATTGTCAGAAGACATTCACCCGGAAGGAGCATCTCAACAATCATATGCGCCAACATTCGAGCGACAATCCACATTGCTGTAATGTTTGCAATAAACCATTTACGCGTAAAGAACATCTTATCAATCATATGTCACGTTGCCACACAGGTGATCGTCCGTTTGCGTGCGAGACGTGCGGCAAATCGTTCCCGCTAAAGGGTAATCTGTTGTTCCATCAGCGCAGCCATACCAAGGGCCAGGAATGTGAGCGTCCGTTTTCGTGCGAGAAATGCCCGAAGAATTTCATATGCAAAGGTCACCTTGTTTCTCACATGCGTTCGCATTCTGACTCGAAGCCACACGCTTGTACCCTATGCAGCAAAGCATTTGTCGAGCGTGGCAATTTGAAGAGGCACATGAAAATGAATCATCCCGATGCAGTGATGCCACCACCACCAGTACCGCATCCACAGATCCCAGCCGGAGTGTTGGCAGCGGTTAAGCAAGAAATAAAACCAATCATAATTCCTCATCAAACACCAACAATGCATACAATTCAGCAAATAACTTCCGGGGCTgctgcggcagcagcagcagcagcagccgctgcGGCTGGTGCAAATGCGGTGCAACTGCCGCCTGGTTTAGTGCCATTGGTCACGTCAACGATAACATCGCATAATAGTCAAAAGCAGCaagtgcaacagcagcagcaacaacaacaagtgcaacagcagcagcaggcacaGCAAGCGGCAcaccagcaacatcagcagcaagtacaacaacagcagcagcagcagcaggcacaggcacagcaacatcagcagcaacagcaacaattgcagcaacaacagcaattgctaCAATTATCCATACAACAGGCAgctcatcatcaacaacaacagcaacagcagcaagaacagcatcgtcaacaccaacaacagcagcagcagcagcaacaacagcaacagcagcaacaacagcaacagcagcagcaagcccATCTTCAGCAAACACAAGCTgcccaacagcaacaacaacaagcgcaTCCACAACCtccgcaacaacagcagcaaccaccGCAAGTGCCGATCGCTTTAATACAAGCCGATCCCAGTGCTTTGGCACGTGCTGCCATGCAATTGCAACATTTACCAGCAAATGTCGAACAACATCCAGTGGTTTACTAA
Protein Sequence
MLQSHISQQQRQSQQHQFMSSSTGNINSNNAATTVESAAAPATTSIVVNDDGGSNAGNILSQHTITSSINSAISSGVGVVNQQQSTNISSIINKTLATSYAATQLALQEQQAHIAATSTITTATSTETATIVPLPSSAPATTATTTTTLLPNAQNLNKYWVLTNFQDPEQQAAVPSYNIGISQSPATTVIPTLAQPIAKGSTVPLTTTTEANALAPLIVAKETAAAGGSAGALQLPQSMLTNAGIGQQLPNGTIITAQQQQQQQQQQQLHVHGAIDDNRQQQHVSQQQHVVAAIQQQQQQQQQQQQLLPQPDSIKVEKPFSANGSKLNQKLIMQHVTASSTPTTSGGGVGSGVGGATTITLGAPKTEIKDDGSMGKPPPGIEMYKVNIEDISQLFTYHEVFGKIHGDVMNHQLAAHGVNAPTTLPPHTNVSNNAAVAAVVASANAAAAAAAAATAANTTVAGVVPPTTTTNLTTAISSTTTGGGGLTTTAPAATSVTVTATGVTGQLLMPKMEGGIPVVDQTATITLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHIRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCSYCQKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSDSKPHACTLCSKAFVERGNLKRHMKMNHPDAVMPPPPVPHPQIPAGVLAAVKQEIKPIIIPHQTPTMHTIQQITSGAAAAAAAAAAAAAGANAVQLPPGLVPLVTSTITSHNSQKQQVQQQQQQQQVQQQQQAQQAAHQQHQQQVQQQQQQQQAQAQQHQQQQQQLQQQQQLLQLSIQQAAHHQQQQQQQQEQHRQHQQQQQQQQQQQQQQQQQQQQQAHLQQTQAAQQQQQQAHPQPPQQQQQPPQVPIALIQADPSALARAAMQLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01055379;
90% Identity
-
80% Identity
-