Basic Information

Insect: Neria commutata
Gene Symbol: -
Assembly: GCA_963457695.1
Location: OY735246.1:18159218-18168403[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.8e-05 0.0026 18.6 2.1 1 23 412 434 412 434 0.97

2 18 1.2e-05 0.0011 19.7 0.4 1 23 440 462 440 462 0.97

3 18 0.001 0.093 13.7 0.5 1 23 468 490 468 490 0.95

4 18 2e-05 0.0018 19.1 3.1 1 23 496 518 496 518 0.97

5 18 4.4e-05 0.0041 17.9 4.7 1 23 524 546 524 546 0.99

6 18 8.1e-05 0.0075 17.1 5.7 1 23 552 574 552 574 0.97

7 18 2.2e-06 0.0002 22.1 3.7 1 23 580 602 580 602 0.98

8 18 1.4e-07 1.3e-05 25.8 2.4 1 23 608 630 608 630 0.97

9 18 8.3e-05 0.0077 17.1 6.7 1 23 636 658 636 658 0.97

10 18 2.4e-05 0.0022 18.8 6.5 1 23 664 686 664 686 0.98

11 18 4e-06 0.00037 21.2 4.5 1 23 692 714 692 714 0.98

12 18 9.4e-06 0.00087 20.1 8.1 1 23 720 742 720 742 0.98

13 18 2.3e-06 0.00021 22.0 7.9 1 23 748 770 748 770 0.98

14 18 8.5e-07 7.9e-05 23.3 7.7 1 23 776 798 776 798 0.98

15 18 0.00027 0.025 15.5 9.5 1 23 804 827 804 827 0.95

16 18 0.00022 0.021 15.7 0.5 1 23 833 855 833 855 0.97

17 18 0.0016 0.15 13.0 4.4 1 23 865 887 865 887 0.98

18 18 1.2e-05 0.0011 19.8 1.6 1 23 893 916 893 916 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.8e-05	0.0026	18.6	2.1	1	23	412	434	412	434	0.97
2	18	1.2e-05	0.0011	19.7	0.4	1	23	440	462	440	462	0.97
3	18	0.001	0.093	13.7	0.5	1	23	468	490	468	490	0.95
4	18	2e-05	0.0018	19.1	3.1	1	23	496	518	496	518	0.97
5	18	4.4e-05	0.0041	17.9	4.7	1	23	524	546	524	546	0.99
6	18	8.1e-05	0.0075	17.1	5.7	1	23	552	574	552	574	0.97
7	18	2.2e-06	0.0002	22.1	3.7	1	23	580	602	580	602	0.98
8	18	1.4e-07	1.3e-05	25.8	2.4	1	23	608	630	608	630	0.97
9	18	8.3e-05	0.0077	17.1	6.7	1	23	636	658	636	658	0.97
10	18	2.4e-05	0.0022	18.8	6.5	1	23	664	686	664	686	0.98
11	18	4e-06	0.00037	21.2	4.5	1	23	692	714	692	714	0.98
12	18	9.4e-06	0.00087	20.1	8.1	1	23	720	742	720	742	0.98
13	18	2.3e-06	0.00021	22.0	7.9	1	23	748	770	748	770	0.98
14	18	8.5e-07	7.9e-05	23.3	7.7	1	23	776	798	776	798	0.98
15	18	0.00027	0.025	15.5	9.5	1	23	804	827	804	827	0.95
16	18	0.00022	0.021	15.7	0.5	1	23	833	855	833	855	0.97
17	18	0.0016	0.15	13.0	4.4	1	23	865	887	865	887	0.98
18	18	1.2e-05	0.0011	19.8	1.6	1	23	893	916	893	916	0.96

Sequence Information

Coding Sequence: ATGAATACTGAACATGTAGCAGCAACTCCTGGTGAGTCAGCAGCAGTAACAAACACCATAAGAAAGCATCGCAACGAATCTAATCACGAGCAACAACCAAATCGCCACTCTCcacatcaacagcaacaacaaattgcacaTTCGCGCCATtcagagcaacagcagcaattgcatgAGTTGGGCAGATATTTCGTTGTATCCAATTTGTTTCAAGGTGCGGGACAAACAACATCCTACAACTTACCGGCTAGCCTACATCCAGTGGCAGCCAACAAGGGCGCACTGCTCACTAGCGGCCACAGTGCTGCACTCCACATACCTCAGCCGATGCTAACACATTCATCCATTGGCCAGCATTTGCCTAATGGCACAATAATAACATCGCATCCACAGCGCATATCCACAGTAGCAGATCAACAACAGGagcttcaacaacaacaacaacagcttacCGTGCATGCTGGTATAAATCACGCAAATGATGACAatcgacagcaacaacagctcaTAGCTGCCATAcagctacagcagcagcaacaagaatcCGTTAAAGCGGGAAAACCTTTTCAAGTCAACGGCAAAACAAaccagcagcatcagcaaccacaacaacaacaacaacagcaagaacaacaaattaTTATGCAGCACGTTAGTGTCCCCTCATCCACGGCGACAACTTCGGGCGGAGGAGGAACGACCACAATCACCCTTGGTGGTATACCCAAGACGGAAATCAAGGAAGATGGTAGCCTGGGCAAGGGCCCTCCGCCGGGCATAGAAATGTATAAAGTGAATATTGAGGATATCTCGCAGCTTTTTACGTACCACGAAGTCTTTGGCAAAATACACGGTGACGTAATGAATCACCAGCTGGCAGCGGCGCATGCTGTGCCCGGTCCGCCGCCATCAGGACATGCGCCGCCACCGCACAATCAGGTGGGCACAAACAATGCAGCCGTGGCAGCAGTTGTAGCTAGTGccaacgctgctgctgctgcagcggctgcggcggctgctgctaACACAACAGCTCCAACCACATCTACCACGAATCTGACTACggccatcagcagcaacagcggtgCAGGTACGACTACAGCGGTTGTGGCCACTACTGCGGCCTCCGGCGGCGAGCTTATTATGCCCAAAATGGAGGGCGGCATTCCGGGGGTAGATCAAACCACGACCATAACGCTCGCTCCTGACGGTACGCCTATTTCCACTGGCACACACGTCTGCGATATTTGCGGCAAAATGTTCCAATTTCGTTACCAGCTGATAGTTCATCGGCGCTATCATAGTGAGCGCAAGCCTTTTAATTGCCAGGTATGTGGCCAAGGCTTCACCACATCGCAGGATCTGACGCGACACGGCAAGATCCATATCGGCGGCCCAATGTTCACGTGCATCGTGTGCTTCAATGTCTTTGCAAACAACGCCAGCCTGGAGCGTCACATGAAGCGCCACTCTACGGATAAACCGTTCGCATGTACCATTTGCCAGAAGACGTTCGCACGTAAGGAGCATCTCGACAACCACTTCCGATCGCACACGGGCGAAACACCGTTTCGCTGCCAGTATTGCGCCAAGACATTTACACGCAAGGAGCACATGGTGAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTCAACCACTACATGTGGCACACTGGTCAAACTCCACATCAGTGCGACGTGTGCGGCAAGAAGTATACACGTAAGGAGCATTTGGCCAATCATGTGCGCTCCCACACCAACGATACCCCATTTAGATGTGAGATTTGTGGCAAGAGCTTCAGCCGCAAGGAACACTTCACCAATCACATTCTCTGGCACACAGGTGAAACACCGCACCGCTGCGACTTCTGCTCCAAGACGTTCACGCGCAAGGAACATCTGTTGAACCACGTGCGCCAGCACACGGGCGAGTCGCCGCACCGCTGTACATACTGCTTGAAGACGTTCACGCGCAAGGAACACCTCGTCAACCACATACGCCAGCACACCGGCGAGACGCCGTTCAAGTGCACCTACTGTACGAAGGCGTTCACACGGAAGGATCACATGGTCAACCACATACGCCAGCACACAGGCGAGTCGCCGCACAAGTGCACGTACTGCACGAAGACGTTCACCCGCAAGGAGCACCTTACGAATCATGTGCGCCAGCACACGGGTGAGTCGCCGCATCGCTGCACCTACTGCAAGAAGACGTTCACGCGCAAAGAGCATCTTACGAATCACATACGTCTGCACACAGGCGACTCGCCGCACAAATGCGAATATTGCCAGAAGACGTTTACGCGGAAGGAGCATCTGAACAACCACATGCGTCAGCATTCGAGCGACAATCCACATTGCTGCAATGTTTGCAATAAGCCCTTCACGCGGAAGGAGCACCTCATCAATCACATGTCGCGCTGCCACACAGGTGATAGGCCGTTCGCCTGCGAGACGTGCGGCAAGTCGTTCCCGCTGAAGGGCAACCTACTGTTCCATCAACGCAGCCATACCAAGGGGCAAGAATGCGAACGGCCCTTCAACTGTGAGAAATGCCCCAAGAACTTCATTTGCAAAGGCCATCTCGTCTCGCACATGCGCTCGCATTCGGGCGAGAAGCCGCATGCCTGCACGCTGTGCAGCAAGGCGTTCGTGGAGCGTGGCAATCTCAAGCGTCACATGAAGATGAATCACCCGGATGCCGTGATGCCACCGCCCCCCGTACCACATCCGCAAATACCGGCAGGCATACTGACGTCAGTCAAGCAGGAAATAAAGCCGATCATCATACCACATCAAGCGCCGACCATGCACACAATACAACAAATTACTTCCGGTGCAGCGGCCGGTGCCGTTCAGCTAGCGCCTGGCCTGGTGCCGTTTGTAACTTCAACCATAACATCACACAATAgtcaaaagcaacagcagcaacaacaacaacaacagcagcagcagcaagcacatcaacaacaccagcagcaggtGCAACAGcaccatcagcagcaacagcaacaattgcaacagcagcaacagcaattgctACAATTGTCCATACAACAAGGCGctcatcatcagcagcaggagcaacatcgtcaacaccaacagcaacagcagcagcagcaacaacaacagcaacaggcacatcatcagcagcagcaaacgcaagttgcacagcagcaacaacaagcacaccAACAATCACAACCTCAGCCGCCCCAGCAGCAGCCACCACAAGTGCCGATCGCCCTTATTCAAACCGATCCGAGTGCGCTCGCACGAGCCGCCATACAACTGCAGCATCTACCTGCGAACGTGGAACAGCATCCGGTGGTTTACTAA
Protein Sequence: MNTEHVAATPGESAAVTNTIRKHRNESNHEQQPNRHSPHQQQQQIAHSRHSEQQQQLHELGRYFVVSNLFQGAGQTTSYNLPASLHPVAANKGALLTSGHSAALHIPQPMLTHSSIGQHLPNGTIITSHPQRISTVADQQQELQQQQQQLTVHAGINHANDDNRQQQQLIAAIQLQQQQQESVKAGKPFQVNGKTNQQHQQPQQQQQQQEQQIIMQHVSVPSSTATTSGGGGTTTITLGGIPKTEIKEDGSLGKGPPPGIEMYKVNIEDISQLFTYHEVFGKIHGDVMNHQLAAAHAVPGPPPSGHAPPPHNQVGTNNAAVAAVVASANAAAAAAAAAAAANTTAPTTSTTNLTTAISSNSGAGTTTAVVATTAASGGELIMPKMEGGIPGVDQTTTITLAPDGTPISTGTHVCDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHVRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFNCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAVMPPPPVPHPQIPAGILTSVKQEIKPIIIPHQAPTMHTIQQITSGAAAGAVQLAPGLVPFVTSTITSHNSQKQQQQQQQQQQQQQAHQQHQQQVQQHHQQQQQQLQQQQQQLLQLSIQQGAHHQQQEQHRQHQQQQQQQQQQQQQAHHQQQQTQVAQQQQQAHQQSQPQPPQQQPPQVPIALIQTDPSALARAAIQLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01133067; iTF_00091564; iTF_01470682;
90% Identity: -
80% Identity: -